PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01270.1.g00100.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 22228.1 Da PI: 4.909 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.5 | 1.4e-35 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk++rr+C+++C la+yfpa+qp+ f+n+h+lFG+sn+lk+l+++ +e+r+dam++++ eA+a+ P +G++ +il Zpz_sc01270.1.g00100.1.sm.mk 7 ACAACKYQRRRCTAECQLAEYFPADQPRLFRNAHRLFGVSNILKTLARVAPERRRDAMRTIIIEANAWETYPSRGCMHFIL 87 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq++++ ++ +l++++++ Zpz_sc01270.1.g00100.1.sm.mk 88 TLQHHIRDVELQLQQANQS 106 **********999999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.045 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-35 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MASGASACAA CKYQRRRCTA ECQLAEYFPA DQPRLFRNAH RLFGVSNILK TLARVAPERR 60 RDAMRTIIIE ANAWETYPSR GCMHFILTLQ HHIRDVELQL QQANQSIEAY RDVLGTLPDD 120 DSLLLQAPQT WTPMQLAQDD MNMMDGAATA TAAAASVVPE PGVEHRGHQD HIEPDDVSCF 180 FVDNIEEEMP LPPPPESR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-21 | 4 | 118 | 7 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-21 | 4 | 118 | 7 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01270.1.g00100.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813245.1 | 4e-38 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A1E5UTR9 | 1e-38 | A0A1E5UTR9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35697.1.p | 8e-36 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 5e-30 | LOB domain-containing protein 27 |