PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01078.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 255aa MW: 28458.5 Da PI: 9.6435 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.4e-32 | 177 | 235 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ Zpz_sc01078.1.g00210.1.am.mk 177 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 235 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 162 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-28 | 169 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.92 | 172 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 177 | 236 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 178 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MERSSQLETC LPSLYGLSPC APPHRRLAPL PNDNKLLQMP LVHEQAGNHG VMLNSSDNDG 60 GLYPLLLPGI PFCPSSSVSC DKPTGFAPLD AVEVNDDAPQ GVMLWRAPRQ RKPAAKSLVI 120 SRSQVATARV HGMPAARVQN RWKGPATAAD KGRTMKVRRK MREPRFCFQT RSDVDVLDDG 180 YKWRKYGQKV VKNSLHPRSY YRCTHSNCRV KKRVERLSED CRMVITTYEG RHTHTPCSDD 240 ADGTDHTGSC AFTSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 168 | 234 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 168 | 234 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01078.1.g00210.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665432 | 1e-119 | EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825009.1 | 1e-105 | probable WRKY transcription factor 12 | ||||
TrEMBL | A0A2T7CY65 | 1e-105 | A0A2T7CY65_9POAL; Uncharacterized protein | ||||
STRING | Si030985m | 1e-101 | (Setaria italica) | ||||
STRING | Traes_2AL_B1270662B.1 | 1e-101 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1138 | 38 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 3e-58 | WRKY family protein |