PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01056.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 416aa    MW: 45618.9 Da    PI: 6.1561
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01056.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.8e-28140194156
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                   k +++WtpeLH+rFv+aveqL G++kA+P++ile+m+++gLt+++++SHLQkYR++
  Zpz_sc01056.1.g00100.1.am.mk 140 KRKVNWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIEGLTRHNIASHLQKYRSH 194
                                   5799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.723137196IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-27138197IPR009057Homeodomain-like
TIGRFAMsTIGR015578.7E-27140194IPR006447Myb domain, plants
SuperFamilySSF466891.08E-18140197IPR009057Homeodomain-like
PfamPF002496.6E-9142192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
LDVDVGFPTS TDCGGVDEFM AVDGDNLLEY IDFTCCDVVP SFFDADGDIL PDLETELLAE  60
FEDHDDKENE DEKWLLLEEE EDHRKKRSGS SEDEVLLSAA TTEDSAAAAG SSSDTSKSSS  120
VSAEGQISKK KKSSKKSNGK RKVNWTPELH RRFVQAVEQL GIDKAVPSRI LEIMGIEGLT  180
RHNIASHLQK YRSHRKHLMA REAEAASWAQ KRQMYAAAAV GTLRTTKDVM PPAAPRPYWA  240
VPTSSTIGFP PPPFLHVWGH PPTAMEAAVP MLPVWPRHLA PPRPWAPLDP AVFWHQQYNG  300
ARKWGPQAVP QMPPAAAAAM LPRFPAPVPG TMMPHPMYRP RMPPPPQITG STSQLQLDAH  360
PSKESIDAAI GDVLVKPWLP LPLGLKPPSL DSVMSELHKQ GIPKIPPAAA ATDRQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-16142196357Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01056.1.g00100.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519493e-62JF951949.1 Triticum aestivum clone TaMYB66 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673438.11e-125golden plant 2 isoform X1
SwissprotQ5NAN51e-101GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A1D6MES11e-123A0A1D6MES1_MAIZE; Golden plant2
STRINGGRMZM2G087804_P031e-123(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-51GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]