PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00992.1.g00090.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

YABBY

Protein Properties

Length: 450aa MW: 48215.4 Da PI: 10.6128

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00992.1.g00090.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	66.5	1.1e-20	97	143	4	53
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlaka 53 +seq+Cyv+C fC+t vsvP+tslfk+vtvrCGhC+sll+vn++ Zpz_sc00992.1.g00090.1.am.mk 97 APASEQLCYVHCHFCDT---VSVPTTSLFKTVTVRCGHCSSLLTVNMRGL 143 5789**********9...6*********************999765 PP
2	YABBY	125.5	7.4e-39	328	404	92	170
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 a++s ++++ ++ +++ + PekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Zpz_sc00992.1.g00090.1.am.mk 328 ARSSAPATS--VTAVQQQQQQLATRMSPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 404 233333322..22223333333445789*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.1E-20	99	151	IPR006780	YABBY protein
Pfam	PF04690	4.6E-38	332	404	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-7	350	397	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.7E-4	353	396	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
LFVRWLPRQI ELLATKKKTH HLLALLLRVL CCCFRQVIPA IDRSVGWWLS VGMSSSSSSS 60 SAASAAVVFP PSPQPQMPPP LLVENLPPLN PLSPVVAPAS EQLCYVHCHF CDTVSVPTTS 120 LFKTVTVRCG HCSSLLTVNM RGLLFPGTPT NIGAAAAAPA SVTSAATTTT TTAITTPPVI 180 TSVNNNDHQF HFPNSLNLAP NPPHQHSILD EISSAHPSLQ LLEQQGLSGL ISGARNVVTA 240 PAPPPPLPVA GKGAKEPSPR TNNAVANRRS QMERLNWVFP HAPGGRARHG MAFSLCEKIV 300 SGSAGARPPL LLSRDVTASR RALARASARS SAPATSVTAV QQQQQQLATR MSPEKRQRVP 360 SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI HFGLMPDHHG LKKTNLLPQE 420 YQRKDGLLKE GLYTAAAAAA AAANMGVTPY

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

LFVRWLPRQI ELLATKKKTH HLLALLLRVL CCCFRQVIPA IDRSVGWWLS VGMSSSSSSS  60
SAASAAVVFP PSPQPQMPPP LLVENLPPLN PLSPVVAPAS EQLCYVHCHF CDTVSVPTTS  120
LFKTVTVRCG HCSSLLTVNM RGLLFPGTPT NIGAAAAAPA SVTSAATTTT TTAITTPPVI  180
TSVNNNDHQF HFPNSLNLAP NPPHQHSILD EISSAHPSLQ LLEQQGLSGL ISGARNVVTA  240
PAPPPPLPVA GKGAKEPSPR TNNAVANRRS QMERLNWVFP HAPGGRARHG MAFSLCEKIV  300
SGSAGARPPL LLSRDVTASR RALARASARS SAPATSVTAV QQQQQQLATR MSPEKRQRVP  360
SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI HFGLMPDHHG LKKTNLLPQE  420
YQRKDGLLKE GLYTAAAAAA AAANMGVTPY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	19	KKKTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00992.1.g00090.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP091994	1e-105	FP091994.1 Phyllostachys edulis cDNA clone: bphyem110b24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796914.1	5e-65	protein YABBY 3-like
Swissprot	Q8L556	1e-53	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A2S3IKW5	1e-63	A0A2S3IKW5_9POAL; Uncharacterized protein
STRING	Pavir.Ia02088.1.p	2e-60	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22855	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-40	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]