PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00891.1.g00180.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 366aa    MW: 38977.5 Da    PI: 6.6183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00891.1.g00180.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-0692113426
                                   ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                   + C++ ++ G Ck+Gd C FaHg
  Zpz_sc00891.1.g00180.1.sm.mk  92 AACPDLRK-GGCKRGDGCEFAHG 113
                                   67999999.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.1288114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.33889115IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-492113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-494115IPR000571Zinc finger, CCCH-type
SMARTSM0035618123146IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MMMMGEGAAH APPWQQSLAS SGGGVDGDDA YVEEEDAVAA LDAYASDEFR MYEFKVRRCA  60
RGRSHDWTDC PFTHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH  120
PARYRTQPCN DGTACRRRVC FFAHTPDQLR VLPQQQQQSG ASPRGGSSPL AESYDGSPLR  180
RQAFESYLTK SMMSSSPTST LVSPPRSPPS ESPPVSPDAA ALRRGSWPAV GSPVNDVVAS  240
LRQLRLGGSP SGASLLAGAY PSGAYGSPKS TGLYSLPSTP TGSSPVTITT PSGATVVTID  300
RLNLGLLEEV EPVMERVESG RALREKVFER LSKEAAVPTD AAAAATAEGA APVTAPDVGW  360
VTDLVD
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00891.1.g00180.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960911.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-162C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0A9E0J00.0A0A0A9E0J0_ARUDO; Uncharacterized protein
STRINGSi024826m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-75C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]