PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00717.1.g00310.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 411aa MW: 42561 Da PI: 5.7157

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00717.1.g00310.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	31.1	6.4e-10	77	117	58	97
DUF573 58 irrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 +rrLK+K++++v++ ++sg+ +sf+++h+q ife+++ iW+ Zpz_sc00717.1.g00310.1.am.mk 77 LRRLKRKYRNCVSRlRDSGDAFSFRSPHEQAIFEIARNIWR 117 79**********8999********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-8	77	116	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MSPTGDDPSA TAAAAAPGGT SFPDADGGGD SEDGDFPHAH LLDPSEPGLP DPASSSAAVL 60 PHAVPAGGSG SGSGGPLRRL KRKYRNCVSR LRDSGDAFSF RSPHEQAIFE IARNIWRPAN 120 KHGRDPAADS DDEDAVASAA ATAVPGSTSP NGKVMSPSSG RQRRRRRATE AGPAPAPAMN 180 MVQPPQPVQL PVSVPVKMDD SPALTQTPMP VMVTMDGSEP LRLPAMSPQS GVPDAEKNCL 240 IPLLKDMISA VINVGVNPFG AKLPELPLGL PMEGEKWRKQ RILELEVYLK RIELLQDQLP 300 GIARDVGPGA LDRPYGIVMD PCVAMGISFA AGGETGCELE ASSTKAQGDG VNGVSPSKRF 360 SSRSSGPRRE PLPPDPAAIA ADTPPPAPPP PLSPGATATV LPPPPPFRHS S

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MSPTGDDPSA TAAAAAPGGT SFPDADGGGD SEDGDFPHAH LLDPSEPGLP DPASSSAAVL  60
PHAVPAGGSG SGSGGPLRRL KRKYRNCVSR LRDSGDAFSF RSPHEQAIFE IARNIWRPAN  120
KHGRDPAADS DDEDAVASAA ATAVPGSTSP NGKVMSPSSG RQRRRRRATE AGPAPAPAMN  180
MVQPPQPVQL PVSVPVKMDD SPALTQTPMP VMVTMDGSEP LRLPAMSPQS GVPDAEKNCL  240
IPLLKDMISA VINVGVNPFG AKLPELPLGL PMEGEKWRKQ RILELEVYLK RIELLQDQLP  300
GIARDVGPGA LDRPYGIVMD PCVAMGISFA AGGETGCELE ASSTKAQGDG VNGVSPSKRF  360
SSRSSGPRRE PLPPDPAAIA ADTPPPAPPP PLSPGATATV LPPPPPFRHS S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00717.1.g00310.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461092.1	1e-106	probable transcription factor At3g04930
Refseq	XP_025799483.1	1e-106	probable transcription factor At3g04930
TrEMBL	A0A1E5UXC0	1e-112	A0A1E5UXC0_9POAL; Uncharacterized protein
STRING	Pavir.Bb03462.1.p	1e-107	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	6e-10	DNA-binding storekeeper protein-related transcriptional regulator