PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00475.1.g00010.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 422aa    MW: 44202.8 Da    PI: 6.4375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00475.1.g00010.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.1e-053333701254
                                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Zpz_sc00475.1.g00010.1.am.mk 333 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 370
                                   677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-5331374No hitNo description
SuperFamilySSF474592.62E-10331379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-8335375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPSPPSVVDA NATTPANSTT KAGSYRASYI GRDMADHQEM IHAAAAAAAT GTSSHGHGVD  60
WWSAAVSCSP AGWSAPADGN SSRSGNAASS ESPRSSSFGA GVSSVTFQEP AGVIQRPAAV  120
AVPQPVAGTF TGDWSQPYYL DGSDFHGYMS ARNDQGHMNA PSLTRPSSSN NPMMAQEPHD  180
PNHQFLSNLG LELLSSPTSS SGGFRSSSLL RSLTEPAASA KPLAGFQQYH LQQQTMMNQA  240
PGSVREALQF SNNTPFWNPA LGFSASEAAE SLGTASQSLA QSRPASSLED KSALEVAGDS  300
SSIIAKKANT DPTLRIKKAR TGTPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL  360
HETIEYIKFL HEQVGMSTDS SEAATMGDLS GRGLCLVPIS STFAVASETP VDFWTPFGAA  420
FR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00475.1.g00010.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612834e-52BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972712.11e-169transcription factor bHLH112
TrEMBLA0A368RHX51e-167A0A368RHX5_SETIT; Uncharacterized protein
STRINGPavir.Fa02016.1.p1e-167(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-40bHLH family protein