PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00468.1.g00240.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 676aa    MW: 71631.6 Da    PI: 9.2199
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00468.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08413433526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                    C++f++ G Ck+Gd C FaHg
  Zpz_sc00468.1.g00240.1.am.mk 413 ACPDFRK-GGCKRGDACEFAHG 433
                                   7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-5408434IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159409435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5412435IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6413433IPR000571Zinc finger, CCCH-type
SMARTSM0035612443466IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258443467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MGPGMHGRCV NPVSLGRPGR RDPCDKVSSA SLMGRQSCWC RLRYAQHGAT LLNVPLSGFG  60
VGVHARWRHA EDYRAKRTAS VGSGTRPCAS RVTPNATAFP RAGASPSVLS PAPPEEFLRR  120
EKKGIAPGPP APSAPRPRSS PAWRVTRAGV SRGMGGAACV ARERDGAVGL DAGDTPARCA  180
LCLGKPKPNS QFPVPHASKT GAPLAVPVST QAGHGDGPKP RRGRDALAGS PRALHGRTDR  240
EATSLRVPNA GPPCLTPPLS AHHASKPEDA LFSPSHLESS RCGPDHPVPT IDPPAATMMM  300
MGEGMSAPPW SASQHHHLPV SGVDTGDDEA APYLLAALQQ YLPSNNDYAC DDEEEATAMA  360
AGAYAGDEFR MYDFKVRRCT RARSHDWTEC PFAHPGEKAR RRDPRKYHYS GTACPDFRKG  420
GCKRGDACEF AHGVFECWLH PARYRTQPCK DGTACRRRVC FFAHTPDQLR VLPPQQSSPR  480
GVGSGASPLA ESYDGSPLRR QAFESYLNKT LSSSPTSTLV SPPKSPPSDS PPLSPDGAAA  540
YLRGSWPGVG SPVNDVLASL RQLRLSKANS FPSGGWTGYP ASAVAYGSPK AGGIYSLPTT  600
PRATPATMAT ATSFVPNLEP LDVGFGVEEE PVQRVESGRA LRAKVLERLS KEGTVSSDAN  660
TGVGGPDVGW VSELIN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00468.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU271e-180C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2S3HYP50.0A0A2S3HYP5_9POAL; Uncharacterized protein
STRINGPavir.Eb00253.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-80C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]