PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00430.1.g00030.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 395aa MW: 42409.4 Da PI: 6.5943 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.6e-07 | 111 | 132 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G C +Gd+C FaHg Zpz_sc00430.1.g00030.1.sm.mk 111 AACPDFRK-GGCMRGDNCEFAHG 132 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 5.1E-5 | 106 | 136 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 107 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.009 | 108 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-5 | 111 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 113 | 134 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 142 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MMMMGEGAAH APPWQHGPAS GGVEGDDAHT LLAALRRYLP SNDSAERDED GEEEAAIAAL 60 DAYACDEFRM YEFKVRRCAR GRSHDWTDCP FAHPGEKARR RDPRRYHYSG AACPDFRKGG 120 CMRGDNCEFA HGVFECWLHP TRYRTQPCKD GTACRRRVCF FAHTPDQLRV LPAQQQQQTA 180 SPRGVTAAAA SGPLAESYDG SLLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS 240 PDAAAALRRG SWPGVGSPVN DVVASLRQLR LASSSPRSAP SGAPFLAGYP SGAFGSPKST 300 GLYSLPSTPT GPSPVTITTP SGATVMTIDR LNLGLLEEAE PVMERVESGR ALREKVFERL 360 SKEATVPNDT TAVATDDGVP AGSAPDVAWV TDLVD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00430.1.g00030.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960911.1 | 0.0 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 1e-173 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A0A9E0J0 | 0.0 | A0A0A9E0J0_ARUDO; Uncharacterized protein | ||||
STRING | Si024826m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 2e-83 | C3H family protein |
Publications ? help Back to Top | |||
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