PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00429.1.g00260.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 289aa MW: 32741.6 Da PI: 5.7595 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 63.4 | 3.8e-20 | 135 | 199 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 Dg++WrKYGqK++++ ++prsYYrCt++ +C+++k v+++++ p + +++Y+g+H+++ Zpz_sc00429.1.g00260.1.sm.mk 135 DGHQWRKYGQKKINNEKHPRSYYRCTYKqeqDCKATKTVQQQDKsvgadHPVMYTVVYHGQHTCK 199 9**************************98999********98752222257899*********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-23 | 122 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-21 | 129 | 199 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-29 | 133 | 200 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-24 | 135 | 199 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.711 | 135 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MCGLPTGQPP ACYDPSRIVC DHRSVMMEIA REQSLVTQLR AIVLPALQAD ERSELVVHMF 60 QNILDCSSKA MAELHLLQKS DDSPAEDTPL VDDKKRIRRI PDDFNKDEDV MLHHKNKRRR 120 FAVSQSIETP VPHYDGHQWR KYGQKKINNE KHPRSYYRCT YKQEQDCKAT KTVQQQDKSV 180 GADHPVMYTV VYHGQHTCKG TNNCSNSVTD DSETKTLGQS SSYSQSSIST KDCSEPCSDQ 240 QMSQDGNEPI NNSADLVAEN YMYEAFDMTA FAPLELESWD LAVLLGFGP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-15 | 135 | 199 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00429.1.g00260.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977389.1 | 1e-112 | probable WRKY transcription factor 63 | ||||
TrEMBL | K3Y972 | 1e-110 | K3Y972_SETIT; Uncharacterized protein | ||||
STRING | Si010764m | 1e-111 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-18 | WRKY DNA-binding protein 46 |