PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00403.1.g00300.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 464aa MW: 50589.5 Da PI: 8.9836 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.7e-12 | 14 | 46 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 rg WT+eEd +l+ +++q+G+++W++I++ g Zpz_sc00403.1.g00300.1.am.mk 14 RGQWTPEEDNKLLSYITQYGTRNWRLIPKNAG-L 46 89***************************999.3 PP | |||||||
2 | Myb_DNA-binding | 44.7 | 3.1e-14 | 90 | 132 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T E++ +++++ G++ W+ Ia+ ++ gRt++++k++w++ Zpz_sc00403.1.g00300.1.am.mk 90 GEFTDAEEQTIIKLHSVVGNR-WSVIAAQLP-GRTDNDVKNHWNT 132 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-23 | 5 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.07 | 9 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.24E-25 | 11 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 13 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-13 | 14 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-9 | 17 | 83 | No hit | No description |
PROSITE profile | PS51294 | 24.905 | 84 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 87 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-13 | 90 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-10 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MGRVPCCEKD NVKRGQWTPE EDNKLLSYIT QYGTRNWRLI PKNAGLSPAN ACARQRPPSH 60 KFLPALRLQR CGKSCRLRWT NYLRPDLKHG EFTDAEEQTI IKLHSVVGNR WSVIAAQLPG 120 RTDNDVKNHW NTKLKKKLSG MGIDPVTHKS FSHLMAEIAT TLAPPQVAHL AEAALGCFKD 180 EMLHLLTKKR PTMPDMAPAP GAGIGMGIAG GTAAPSFPAQ PQADDTIERI KLGLSRAIMN 240 EPGASASDKH QPPWAPVDVP EGLTGMYAAY DPAQGHENFR YEGTVSEYVL GGGDADQGTS 300 MWSHQSIYSG SSGTEAPRAA SALPKKGNDS VGSSRGEDEM DDSKEGGKGG SDMSGLFGSD 360 CVLWDLQDEL TNHMLSFFWR TCSKPRLRRC IGRSERARLK FTLLLSEIFT EKCSVSPFLF 420 SMAAAQLHGS AAAAAAASYR RTRPFAVSPS CRWVQNPLPG SPKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 138 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00564 | DAP | Transfer from AT5G56110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00403.1.g00300.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034238 | 1e-160 | BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds. | |||
GenBank | BT039422 | 1e-160 | BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds. | |||
GenBank | BT040670 | 1e-160 | BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds. | |||
GenBank | BT043240 | 1e-160 | BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds. | |||
GenBank | BT054988 | 1e-160 | BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146260.1 | 0.0 | uncharacterized LOC100279834 | ||||
Swissprot | Q7XQN1 | 1e-169 | MYB80_ORYSJ; Transcription factor MYB80 | ||||
TrEMBL | A0A3L6GFB1 | 0.0 | A0A3L6GFB1_MAIZE; Transcription factor MYB80 | ||||
STRING | GRMZM2G173633_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10867 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-106 | myb domain protein 103 |