PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00289.1.g00210.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 313aa    MW: 33792.1 Da    PI: 8.4308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00289.1.g00210.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32234292159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  Zpz_sc00289.1.g00210.1.am.mk 234 LDDGYRWRKYGQKAVKNSAHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 292
                                   59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-33220292IPR003657WRKY domain
SuperFamilySSF1182904.32E-28228293IPR003657WRKY domain
PROSITE profilePS5081128.449229294IPR003657WRKY domain
SMARTSM007742.0E-38234293IPR003657WRKY domain
PfamPF031069.8E-26235292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MHACARSTPN TNHRSTESTE WMLLFHVAPG LCHGPALKTS SMHIAINHPA GTCLRCSCTR  60
QLHPSSFSME NQLQGDVDEA HALPSFPYFA APSPPLGPPS LSSDDHHQHG ALAADLQQQQ  120
PVAAACNSLL PLGGAGNQLQ APPTMVLPTM VDWSSLLQQA SLMTPAVPGL QEAAAQADQS  180
GENHCGEVGA SGSGSGSGSK ESKAWGKVDA GRSGKKKVSR PRFAFQTRSV NDILDDGYRW  240
RKYGQKAVKN SAHPRSYYRC THHTCNVKKQ VQRLAKDTSI VVTTYEGVHN HPCEKLMEAL  300
SPILKQLQFL SQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23224291774Probable WRKY transcription factor 4
2lex_A2e-23224291774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00289.1.g00210.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1089091e-119AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBankAY3418451e-119AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBankAY8706071e-119AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969857.11e-109probable WRKY transcription factor 56
TrEMBLK3XLH81e-108K3XLH8_SETIT; Uncharacterized protein
STRINGSi002751m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.16e-57WRKY DNA-binding protein 24