PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00286.1.g00190.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 380aa    MW: 42798.3 Da    PI: 8.456
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00286.1.g00190.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.6e-07148172123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dC+ s++rk++L+rH+ tH
  Zpz_sc00286.1.g00190.1.sm.mkhc 148 FNCPleDCPFSYKRKDHLNRHMLTH 172
                                     78**********************9 PP
2zf-C2H215.54.9e-05177202123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     ++C+   C++sFs k n++rH +  H
  Zpz_sc00286.1.g00190.1.sm.mkhc 177 FSCTvdGCDRSFSIKANMQRHVKEfH 202
                                     899999****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355127496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261120147IPR007087Zinc finger, C2H2
SMARTSM003551.3120142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-6121146IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-10132174No hitNo description
Gene3DG3DSA:3.30.160.607.2E-8147174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.5E-5148172IPR007087Zinc finger, C2H2
SMARTSM003553.1E-4148172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097148177IPR007087Zinc finger, C2H2
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8158207No hitNo description
Gene3DG3DSA:3.30.160.601.7E-9175203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.219177207IPR007087Zinc finger, C2H2
SMARTSM003550.0028177202IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-5229268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.73E-5229268No hitNo description
SMARTSM003556246272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280248272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSLYIQLNSH REAISVFSHV TASGHRPDGF AVVGALSASS GVGDLGVGKV MCSADEFDGE  60
KKVGKTVCKD IRRYKCDFCD VVRSKKCLIQ AHMVEHHKDE LDKSEIYNSN GGKIVHEVEQ  120
RCLECGVCFQ KPAHLKQHMQ CHSQERLFNC PLEDCPFSYK RKDHLNRHML THQGKSFSCT  180
VDGCDRSFSI KANMQRHVKE FHEGGNTAKS KQQFVCKEEG FKLDYVEVKS NMTKHMKACH  240
DQLKPFPCRF AGCDKAFTYK HVRDNHEQSS AHGDFEEIDA QLQSRSRGGR KRKALTVETL  300
TRKRVTISSE PSATDNAEIR HVAQGANMPR DPTNPRSRRQ ETTLTVGWTA RTATDTPNTE  360
GTPIGPKLHA SCGDWSTWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A6e-1512427119160PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D6e-1512427119160PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00286.1.g00190.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.11e-127transcription factor IIIA-like isoform X1
TrEMBLA0A3L6QDW71e-148A0A3L6QDW7_PANMI; Zinc finger X-linked protein ZXDA-like isoform X1
STRINGSi020193m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-37transcription factor IIIA