PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00220.1.g00280.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GATA

Protein Properties

Length: 394aa MW: 41884.2 Da PI: 6.9067

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00220.1.g00280.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.8	7.4e-19	309	343	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C ttkTp+WR gp+g+ tLCnaCGl+y kg+ Zpz_sc00220.1.g00280.1.am.mk 309 CSHCSTTKTPQWRAGPRGPGTLCNACGLRYTDKGS 343 ******************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	8.0E-17	303	358	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	12.123	303	342	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.37E-15	305	365	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.3E-15	307	342	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.00E-19	308	365	No hit	No description
Pfam	PF00320	1.8E-16	309	343	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	309	334	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MPLQPSTTTM SPFFLYDEKE GIDDAPANLE GGWPRGGLSC PDELNNVVPV EYFNFAKFSA 60 DNAPDDVLGL DGGALSDTSG HAAPTSAQPT ASDSAGPCGA LDGAAATGFV PPFPQPGFVD 120 VLDIDSSPPL PDYLSCLVAT FLAPSWPAQH TLYGVIPDLA PPLPAQDSES LNCVVAPYMA 180 PPLPAPDVAP RSVPLLPTQH AVAGAVVPDT APPLKAHDTV PPAGPPVTCS TSSGCVSSMP 240 WEHESACVVP RKQRHRSVTR RNPTWLPKSQ FYEKPPAAPR AALSSLEAGG SGKSPVVKRR 300 RNRERDRVCS HCSTTKTPQW RAGPRGPGTL CNACGLRYTD KGSLLETYRP TTSPSFDSGK 360 HSNRQSKAAK IMEKAELTKV MDDRYRRRLS ETSP

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MPLQPSTTTM SPFFLYDEKE GIDDAPANLE GGWPRGGLSC PDELNNVVPV EYFNFAKFSA  60
DNAPDDVLGL DGGALSDTSG HAAPTSAQPT ASDSAGPCGA LDGAAATGFV PPFPQPGFVD  120
VLDIDSSPPL PDYLSCLVAT FLAPSWPAQH TLYGVIPDLA PPLPAQDSES LNCVVAPYMA  180
PPLPAPDVAP RSVPLLPTQH AVAGAVVPDT APPLKAHDTV PPAGPPVTCS TSSGCVSSMP  240
WEHESACVVP RKQRHRSVTR RNPTWLPKSQ FYEKPPAAPR AALSSLEAGG SGKSPVVKRR  300
RNRERDRVCS HCSTTKTPQW RAGPRGPGTL CNACGLRYTD KGSLLETYRP TTSPSFDSGK  360
HSNRQSKAAK IMEKAELTKV MDDRYRRRLS ETSP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00220.1.g00280.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20691	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	1e-19	GATA transcription factor 12