PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00206.1.g00290.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 271aa    MW: 29023.7 Da    PI: 5.214
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00206.1.g00290.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-16116158247
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                                    y+GVr+++ +g+++AeIrd + ng  +r++lg+f taeeAa a++
  Zpz_sc00206.1.g00290.1.am.mk 116 SYRGVRRRP-WGKFAAEIRDTRRNG--ARVWLGTFATAEEAALAYD 158
                                   69*******.**********54455..******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.40E-23115170No hitNo description
SuperFamilySSF541712.29E-18116172IPR016177DNA-binding domain
PROSITE profilePS5103218.294116159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-25116170IPR001471AP2/ERF domain
PfamPF008472.1E-11116158IPR001471AP2/ERF domain
SMARTSM003806.4E-28116176IPR001471AP2/ERF domain
PRINTSPR003671.0E-10117128IPR001471AP2/ERF domain
PRINTSPR003671.0E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAIGGQGSGS NQPNEGSNIL ENVWATIMTE CSAATPASSS TAVSSSEAGE PKPEAILQRL  60
PSLGRWISMG AEEWEELLSG TTPDAYGEEL LVSSPPALKH EDRASSRAAP VPTCKSYRGV  120
RRRPWGKFAA EIRDTRRNGA RVWLGTFATA EEAALAYDVX XGPRARLNFP LDVVQREVAA  180
TGSGGSEATR VLRRRRRRTG AADAASSTRS ACSDQTMVSF AWGSGQEGGM MTERSSSDAG  240
AIAFEDIGGE YWDYLFAPLC GDDILIRHQH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-22115173466ATERF1
3gcc_A6e-22115173466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RVLRRRRRR
2193198RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00206.1.g00290.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241435e-32AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149615e-32AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126135e-32CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.14e-98ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P98e-97A0A2S3H9P9_9POAL; Uncharacterized protein
STRINGPavir.Ca00939.1.p4e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-24ethylene responsive element binding factor 1