PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00162.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 339aa    MW: 37663 Da    PI: 8.9834
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00162.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-09107131226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   + + C+++ ++G CkyG  C+F+H+
  Zpz_sc00162.1.g00140.1.am.mk 107 GKPDCSYYVKFGSCKYGMDCRFNHP 131
                                   7899********************8 PP
2zf-CCCH25.52.3e-08158183126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+++ ++G CkyG  C F+H+
  Zpz_sc00162.1.g00140.1.am.mk 158 PGEPDCSYYVKFGSCKYGMDCMFNHP 183
                                   5789*********************8 PP
3zf-CCCH31.33.6e-10210235126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   ++++ C+++ ++G CkyG  C+F+H+
  Zpz_sc00162.1.g00140.1.am.mk 210 PGEPDCSYYVKFGSCKYGMDCRFNHP 235
                                   5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305105133IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-5109133IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4157184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347157185IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5159183IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-5209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277209237IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7211235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5214238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4215238IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MLAAEPTASA GIAKKQSMPS ALRKGTTKRN PRAGHGPSKD LTPRPGLAPS TGLPSLLPLH  60
KLCSIGSCKH RMAYSFNHPA KPCVWQSRHA RASEQLVHDS VYPRRPGKPD CSYYVKFGSC  120
KYGMDCRFNH PSKPCGWQGR HTAADEKQEH ESVYPRRPGE PDCSYYVKFG SCKYGMDCMF  180
NHPSKPCGWQ GRHTAADEKQ EHESVYPRRP GEPDCSYYVK FGSCKYGMDC RFNHPLHEPM  240
FPVDSPTQKL FGALLDGVIV GGALVNSVED LVLRDGRLLF SPFDLSHVGD QPEPYRVTVD  300
ACAPCTGISV QGTPARHPFP ARLLLPLSSL RFPNLWRPI
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00162.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2234747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-33zinc finger protein 1