PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00115.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 324aa MW: 36779 Da PI: 6.4472 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.1 | 4.1e-22 | 55 | 125 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + + Zpz_sc00115.1.g00210.1.am.mk 55 QWSHAETAAFLAIRADLDHSFLTTKRNKALWEAVSARLAAQGFARTPDQCKSKWKNLVTRFKGTEAAAASA 125 7**************************************************************99988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.83E-21 | 54 | 119 | No hit | No description |
Pfam | PF13837 | 3.3E-17 | 55 | 148 | No hit | No description |
PROSITE profile | PS50090 | 7.515 | 56 | 112 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDPFHHLNTS FSNPYHPLLS PSPPHHFPPL PPLAVEPPPQ PLPSSSSLER ERLPQWSHAE 60 TAAFLAIRAD LDHSFLTTKR NKALWEAVSA RLAAQGFART PDQCKSKWKN LVTRFKGTEA 120 AAASAAQPAE LDPGATAARQ FPFHDEMRRI FEARAERARA LESKKAKGKD VRPEDNEGGG 180 RGEGDDEDYE EIEAAEMLVE EEAGRAAAED RDAAGVARKR RRKQAARTRS ADQGEVEAML 240 REFTRRQLEM EERWMEAAEA REAERRQREE EWRTAMVALG EERLALVRRW REREDAWRAR 300 AEEREERRHQ LVSALLAKLG GDAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 221 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00115.1.g00210.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130598 | 1e-97 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. | |||
GenBank | AP014961 | 1e-97 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 1e-97 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT836356 | 1e-97 | CT836356.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051H02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637590.1 | 1e-105 | trihelix transcription factor GT-3b | ||||
Refseq | XP_015637591.1 | 1e-105 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A0E0H8W8 | 1e-106 | A0A0E0H8W8_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA05G01910.1 | 1e-106 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-25 | Trihelix family protein |