PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00086.1.g00750.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 39511.1 Da PI: 6.4001 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 94 | 115 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++ ++ G Ck+Gd C FaHg Zpz_sc00086.1.g00750.1.am.mk 94 AACPDLRK-GGCKRGDGCEFAHG 115 67999999.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.12 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.338 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-4 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 96 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.258 | 125 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 12 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MMMMGEGAAH APPWQQSLAS GGGGVDGDGD DAYVEEEDAV AALDGYASDE FRMYEFKVRR 60 CARGLSHDWT DCPFAHSGEK ARRRDPRRFH YSGAACPDLR KGGCKRGDGC EFAHGVFECW 120 LHPARYRTQP CKDGTACRRR VCFFAHTPDQ LRVLPPQQQQ QQSGASPRDG SSPLAESYDG 180 SPLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS PDAAILRRSS WPAVGSPVND 240 VVASLRQLRL GGSPSGASLL AGAYPSGAYG SPKSTRLYSL PSTPTGPSPV TITTPSGATV 300 VTIDRLNLGL LEEVEPVMER VESGRALREK VFERLSKEAA VPTDAAAAAT AEGAAPVTAP 360 DVGWVTDLVD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00086.1.g00750.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960911.1 | 1e-179 | zinc finger CCCH domain-containing protein 35 | ||||
Swissprot | Q6L4N4 | 1e-160 | C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35 | ||||
TrEMBL | A0A0A9E0J0 | 0.0 | A0A0A9E0J0_ARUDO; Uncharacterized protein | ||||
STRING | Si024826m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 4e-78 | C3H family protein |
Publications ? help Back to Top | |||
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