PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00086.1.g00750.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 370aa MW: 39511.1 Da PI: 6.4001

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00086.1.g00750.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	94	115	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++ ++ G Ck+Gd C FaHg Zpz_sc00086.1.g00750.1.am.mk 94 AACPDLRK-GGCKRGDGCEFAHG 115 67999999.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.12	90	116	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.338	91	117	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	94	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-4	96	117	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	125	149	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	125	148	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MMMMGEGAAH APPWQQSLAS GGGGVDGDGD DAYVEEEDAV AALDGYASDE FRMYEFKVRR 60 CARGLSHDWT DCPFAHSGEK ARRRDPRRFH YSGAACPDLR KGGCKRGDGC EFAHGVFECW 120 LHPARYRTQP CKDGTACRRR VCFFAHTPDQ LRVLPPQQQQ QQSGASPRDG SSPLAESYDG 180 SPLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS PDAAILRRSS WPAVGSPVND 240 VVASLRQLRL GGSPSGASLL AGAYPSGAYG SPKSTRLYSL PSTPTGPSPV TITTPSGATV 300 VTIDRLNLGL LEEVEPVMER VESGRALREK VFERLSKEAA VPTDAAAAAT AEGAAPVTAP 360 DVGWVTDLVD

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MMMMGEGAAH APPWQQSLAS GGGGVDGDGD DAYVEEEDAV AALDGYASDE FRMYEFKVRR  60
CARGLSHDWT DCPFAHSGEK ARRRDPRRFH YSGAACPDLR KGGCKRGDGC EFAHGVFECW  120
LHPARYRTQP CKDGTACRRR VCFFAHTPDQ LRVLPPQQQQ QQSGASPRDG SSPLAESYDG  180
SPLRRQAFES YLTKSMMSSS PTSTLVSPPR SPPSESPPVS PDAAILRRSS WPAVGSPVND  240
VVASLRQLRL GGSPSGASLL AGAYPSGAYG SPKSTRLYSL PSTPTGPSPV TITTPSGATV  300
VTIDRLNLGL LEEVEPVMER VESGRALREK VFERLSKEAA VPTDAAAAAT AEGAAPVTAP  360
DVGWVTDLVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00086.1.g00750.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960911.1	1e-179	zinc finger CCCH domain-containing protein 35
Swissprot	Q6L4N4	1e-160	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	A0A0A9E0J0	0.0	A0A0A9E0J0_ARUDO; Uncharacterized protein
STRING	Si024826m	1e-175	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	4e-78	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]