PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00074.1.g00250.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 279aa    MW: 29716 Da    PI: 5.5776
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00074.1.g00250.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY871.7e-2790151159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dD y+WrKYGqKe+ g+ +pr+YYrCt++   gC ++k+v+r++edp +++++Y g+H+++
  Zpz_sc00074.1.g00250.1.am.mk  90 MDDSYSWRKYGQKEILGAMHPRAYYRCTHRnsqGCAATKQVQRTDEDPALFDVIYLGTHTCR 151
                                   59***************************98889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.13685153IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-2787151IPR003657WRKY domain
SuperFamilySSF1182901.7E-2588152IPR003657WRKY domain
SMARTSM007742.7E-3890152IPR003657WRKY domain
PfamPF031066.2E-2691151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDNFDGNGGS GSSRLLAVTE LGHIKELLKQ LEEHLGGGSR DLCKRLASQI FSHAERSIGI  60
ISSADFNKRS AAGDGLAAVT PGSLGGETPM DDSYSWRKYG QKEILGAMHP RAYYRCTHRN  120
SQGCAATKQV QRTDEDPALF DVIYLGTHTC RVHKMAPDAE ADQAAAATQP PQRNTDARRR  180
SLPLNLTVKT QPQGRISSAT PFGAFSASGN WDGASPAATS DSNHVASLPP FEAAEWRAQS  240
ALQEVVSALV VAGAPPATAV DMDVTDDELL DIDVSCFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-2390151869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00074.1.g00250.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770663e-46AK377066.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3147D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.13e-76probable WRKY transcription factor 30
TrEMBLA0A2S3GYW58e-75A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p1e-77(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.29e-29WRKY family protein