PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00074.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 33268.1 Da PI: 6.5054 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.7 | 2.1e-27 | 118 | 178 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +dDg++WrKYGqKe+ g+++pr+YYrCt++ gC ++k+v+r++edp++++++Y g+H++ Zpz_sc00074.1.g00210.1.am.mk 118 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCAATKQVQRTDEDPNLFDVIYLGTHTC 178 59***************************98999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-27 | 113 | 179 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.964 | 113 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-25 | 115 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-39 | 118 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 119 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDGGVHCGGG SRHVVTELGH IKELVTQLEV HLAESPDLCK HLASQIFSLA ERSIGIITSS 60 DFKKRSAAEA GLASAATPSL LSDAVDAPFK TNKKRKMMEK SKHQVRVSPG NGEAITPVDD 120 GHSWRKYGQK EILGAKHPRG YYRCTHRHSQ GCAATKQVQR TDEDPNLFDV IYLGTHTCVH 180 NKTAALTAGG QAAQPPTERN PEAHALLQNL SANLTVNTEG LAAAGEPQGW GTATATPLCF 240 SSTSVNNWGV SPATSDSNRV SPFHPFEAAD WRAQSELQEV VSALVAAGAP STPAFDMDED 300 FVDIDISSFF V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-23 | 111 | 178 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00074.1.g00210.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800891.1 | 1e-114 | probable WRKY transcription factor 30 | ||||
TrEMBL | A0A1D8F0I2 | 1e-116 | A0A1D8F0I2_9POAL; WRKY74-1 protein | ||||
STRING | Pavir.Ba02545.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 2e-35 | WRKY family protein |