PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00046.1.g00990.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 382aa    MW: 41401.1 Da    PI: 9.1981
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00046.1.g00990.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.71.5e-1884164273
                      trihelix   2 WtkqevlaLiearremeerlrrg.........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                                   Wt +e+l Li+a+r ++er   g         ++++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + t 
  Zpz_sc00046.1.g00990.1.sm.mk  84 WTLHETLILITAKRLDDERRAGGvvagspttpRSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYEARATH 164
                                   **************7777777543333333336******************************************999863 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012172.2E-105264No hitNo description
PRINTSPR012172.2E-106985No hitNo description
PROSITE profilePS500906.93476149IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-477151IPR009057Homeodomain-like
PfamPF138376.7E-1283161No hitNo description
PRINTSPR012172.2E-10220237No hitNo description
PRINTSPR012172.2E-10243268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSADNVAQPA APMSGSSDPS PSSSAAAASS PLGHYRPHPP PHPHPHPHAH MTPPSPASAS  60
APAPPPGPPP SPASAPRDYR KGNWTLHETL ILITAKRLDD ERRAGGVVAG SPTTPRSAEQ  120
RWKWVENYCW NHGCLRSQNQ CNDKWDNLLR DYKKVRDYEA RATHPPGSAA AAHRSYWSME  180
RHERKDRNLP TNLAPEVFDA LSDVLARRAA RRGGVAIAGT PTPPLALPPP PPPHPSPPNP  240
LVSHPRPPTP HHLPLPAAMA PPPPATTSVS GEEEEVSGSS ESGDEEGSGA DEPEPKRRRL  300
NRLGSSVVRS ATVLARTMVA CEEKRERRHR ELLGLEERRL RLEEERTEVR RQGFTGLVSA  360
VNSLSSAIHA LVSDHRSGDS SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295299KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00046.1.g00990.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-120trihelix transcription factor ASR3
TrEMBLA0A1B6PNZ91e-119A0A1B6PNZ9_SORBI; Uncharacterized protein
STRINGSb06g032410.11e-120(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-44Trihelix family protein