PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma9g00720.1
Common NameZOSMA_9G00720
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 279aa    MW: 32379.5 Da    PI: 7.2686
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma9g00720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.31.2e-33371291102
                     HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     aFl+k+y+i++d+++++++sws +g+sfvv+d++ fa +++p++Fkh+nf SFvRQLn YgFkkv+ ++         weF+++ F +gkk+ll+
  Zosma9g00720.1  37 AFLTKTYDIVDDPTIDRIVSWSCTGSSFVVWDTHAFAMDLIPRFFKHNNFCSFVRQLNSYGFKKVHPDR---------WEFANDGFLRGKKQLLK 122
                     69****************************************************************999.........***************** PP

                     XXXXXXX CS
    HSF_DNA-bind  96 kikrkks 102
                     +ikr+k 
  Zosma9g00720.1 123 YIKRRKP 129
                     *****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-3234127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-5334127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3534127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSFNPVKEE EFREEAGVSG SYPKISIACL HDQDPPAFLT KTYDIVDDPT IDRIVSWSCT  60
GSSFVVWDTH AFAMDLIPRF FKHNNFCSFV RQLNSYGFKK VHPDRWEFAN DGFLRGKKQL  120
LKYIKRRKPT PHSIPATACA EIGNEDCEIQ RLRRDDSIIR TELLNLRREQ QANRSHLESM  180
EQRLQAIEKK QKITINLLFR ALQSPGGFHQ PSQRKGKKLL KTVEIDVVSN QHKRREKEEE  240
EDRDRDMNDE FWKELLNDGI DEESDPGGIL TPTTGHRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-253612718120Heat shock factor protein 1
5d5u_B2e-253612727129Heat shock factor protein 1
5d5v_B2e-253612727129Heat shock factor protein 1
5d5v_D2e-253612727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120126LKYIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741767.11e-76PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_017623917.11e-76PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ338B01e-70HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A0K9NGT00.0A0A0K9NGT0_ZOSMR; Heat stress transcription factor A-2c
STRINGEMJ017952e-76(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.13e-66heat shock transcription factor A7A
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]