PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma69g00060.1
Common NameZOSMA_69G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 445aa    MW: 47230.2 Da    PI: 7.0716
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma69g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11246291555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P++      K +Ka++L + +eY+k Lq
  Zosma69g00060.1 246 HSIAERLRRERIAERMKALQELVPND-----NKSDKASMLDEIIEYVKFLQ 291
                      99***********************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.09E-12239295No hitNo description
SuperFamilySSF474592.62E-16239301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.799241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-16243300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-9246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-13247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MHQPKRGEMT GGASPSSSLS PQIATRQNHD DFLDQMFSTG VPSWTDFSKS PWELTDPTAH  60
IEDTILLANR LHQNQITSSG GGGSVAPESS SSAYLKSPQT GEMHNLMMMS LLTNDDSGMM  120
QSPVPFPISV SNNNTFNPSP PGSDVLYTGF TASLPPPPPP PQQQQQQLIS RQQVTVYLRS  180
PSPIIILSLI SLSLQRTSQS YGGNLQQQQQ QHQPAALPRS VSSTGGVTAP PRHRVRARRG  240
QATDPHSIAE RLRRERIAER MKALQELVPN DNKSDKASML DEIIEYVKFL QLQVKVLSMS  300
RLGGAAAVAP LVAAGMCCSN VSNEGGGGGG GGMGTTSDND ESSLAVTEQQ VAKLMEEDMG  360
SAMQYLQGKG LCLMPISLAS AISTATGHPR KMMTTTTAPM VATAAAEASP VAIRHQLDLT  420
SSSSLSVLTT VQSADKNNAS ISKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578735.13e-91LOW QUALITY PROTEIN: transcription factor bHLH69
TrEMBLA0A0K9NTM50.0A0A0K9NTM5_ZOSMR; Uncharacterized protein
STRINGVIT_11s0037g00040.t013e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-55LJRHL1-like 1