PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma34g00650.1
Common NameZOSMA_34G00650
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bZIP
Protein Properties Length: 232aa    MW: 25395.3 Da    PI: 6.7557
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma34g00650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_125.92.1e-0879125753
                      HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                       +r   NReA r++R++Kka+++ Le++   L +eN+ L k+++ l 
  Zosma34g00650.1  79 KKRSVGNREAVRKYREKKKARTASLEDENRDLREENRVLSKKVQYLA 125
                      688889*******************************9999998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.8E-872140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-1378140No hitNo description
PfamPF077162.4E-1179124IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.97979124IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-880126No hitNo description
CDDcd146863.42E-1385131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEDGDLDLGD FNQDVDEMLS SCSMGGFFND VSRDTQACTH THTCNPPGPD LANTHTHTCF  60
HVHTNILPTP DSAGVRDVKK RSVGNREAVR KYREKKKART ASLEDENRDL REENRVLSKK  120
VQYLASLEAE NTRLKCMLLD FKGRIDGEIG SFPYQRQQQI KGSSGNSNPL TLLNNANFNG  180
NSCIMSCGNA QGLFPNVCEL GTATPCLRPS TSSMENNGAA CKSIQTSTKE T*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028765730.12e-62basic leucine zipper 23
RefseqXP_028765731.12e-62basic leucine zipper 23
SwissprotQ8GTS28e-59BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A0K9P6Y41e-172A0A0K9P6Y4_ZOSMR; Basic-leucine zipper (BZIP) transcription factor family
STRINGXP_010266832.12e-61(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41753572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.13e-56bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]