PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma317g00310.1 | ||||||||
Common Name | ZOSMA_317G00310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 283aa MW: 31738.6 Da PI: 8.3517 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.2e-09 | 104 | 124 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G Ck+Gd+C FaHg Zosma317g00310.1 104 ACPDYRK-GSCKRGDSCDFAHG 124 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.92E-5 | 98 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 100 | 126 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 103 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 104 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 32 | 134 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.225 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MMLGERTHHL SPTIEVPSWP PTSVYHDVSL TSFRRFLPSN DVFSIFSSDT SNSDFACDEF 60 RMYEFKVRRC MKGRSHDWTE CPYAHPGEKA RRRDPRKYHY SGTACPDYRK GSCKRGDSCD 120 FAHGVFECWL HPARYRTQPC KDGIGCRRRV CFFAHTAEQL RVLIQSPKGS SSKTDSYDGS 180 PMRQQKLQHH ISSTPSSPAA DSGGYSSSSM NELLFSMRQL QMSKASTVWD SPSSGSGGLF 240 DGWLEPVERV ESGRDLRAMT AKKVSMESCL GSGMDDISGY LS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028554171.1 | 4e-97 | zinc finger CCCH domain-containing protein 2 | ||||
Swissprot | Q9M0G2 | 2e-83 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A0K9P9I0 | 0.0 | A0A0K9P9I0_ZOSMR; Zinc finger CCCH domain-containing protein | ||||
STRING | GSMUA_Achr10P27910_001 | 3e-94 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 6e-86 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma317g00310.1 |
Publications ? help Back to Top | |||
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