PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma281g00170.1
Common NameZOSMA_281G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YB
Protein Properties Length: 340aa    MW: 35381.6 Da    PI: 8.1242
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma281g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.64.2e-54109205197
             NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                       vreqdrf+Pianv+rim+kvlP++akis+daket+qecvse+isf+tsea+++cq+e+rkti+++d+lwa+++lGf+dy+epl++y+++yre+
  Zosma281g00170.1 109 VREQDRFMPIANVIRIMRKVLPTHAKISDDAKETIQECVSEYISFITSEANERCQQEQRKTITAEDVLWAMSKLGFDDYIEPLSMYIQRYREI 201
                       69******************************************************************************************* PP

             NF-YB  94 egek 97 
                       eg++
  Zosma281g00170.1 202 EGDH 205
                       *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-50103208IPR009072Histone-fold
SuperFamilySSF471135.28E-38112209IPR009072Histone-fold
PfamPF008084.7E-26115179IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006156.3E-18143161No hitNo description
PROSITE patternPS006850146162IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-18162180No hitNo description
PRINTSPR006156.3E-18181199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MNCRTPPNAH LPLHTPQTIT GHRRTRIMDG TGNYQTYQSL PRSSSGVMMP GNGNGPPTRN  60
GGMMVVLPQD ALGSSSSSSS SAAAAAGPAG TGGGPAGGGV LQQDQRPVVR EQDRFMPIAN  120
VIRIMRKVLP THAKISDDAK ETIQECVSEY ISFITSEANE RCQQEQRKTI TAEDVLWAMS  180
KLGFDDYIEP LSMYIQRYRE IEGDHRGSIR GDHLPPIKRS GSTDISGHLF GPQPPPGLMY  240
GPPPTHHIPY HHQSMFAGGG GGGGGGLMGG AGGLMGGGGG LMGNGGGGGY YRGDLSGSGI  300
GGGGVGPPQQ APPQMSVLQP NQHLNLGPNY DPFAGGSYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-58109200697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PD880.0A0A0K9PD88_ZOSMR; Uncharacterized protein
STRINGXP_010252777.12e-65(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.15e-59NF-YB family protein