PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma265g00260.1 | ||||||||
Common Name | ZOSMA_265G00260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 198aa MW: 22511.7 Da PI: 9.4954 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.6e-32 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHe Fv+av+qLGG+++AtPk il +m v+gLtl+h+kSHLQkYRl Zosma265g00260.1 23 KQRLRWTSELHELFVNAVSQLGGPDRATPKGILTAMAVPGLTLYHIKSHLQKYRL 77 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-18 | 20 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.471 | 20 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-30 | 21 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-25 | 23 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.7E-8 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-15 | 110 | 149 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MYRTKNTSTL TLFGVSSPTT ATKQRLRWTS ELHELFVNAV SQLGGPDRAT PKGILTAMAV 60 PGLTLYHIKS HLQKYRLSIC LPVYQATDNS KIERKDNIDN ITNMDSASLD KTLELQIEVQ 120 KRFDEQLEIQ RQLQLRIGAQ VRYLQEITED LPLVFEDKQK KQSENDNYPV KKVKKPRIGD 180 QAALFLSANK LDSYVTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-21 | 23 | 76 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | DKQKKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010904694.1 | 2e-54 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 3e-48 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0K9PH22 | 1e-143 | A0A0K9PH22_ZOSMR; MYB transcription factor | ||||
STRING | XP_008788479.1 | 2e-53 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 3e-39 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma265g00260.1 |