PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma262g00100.1
Common NameZOSMA_262G00100
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 338aa    MW: 37161.9 Da    PI: 5.8932
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma262g00100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+eEd +l  +++q+G+++W+ I++  g+ R++k+c++rw +yl
  Zosma262g00100.1 14 RGQWTPEEDNKLSSYIAQHGTRNWRVIPKNAGLQRCGKSCRLRWTNYL 61
                      89********************************************97 PP
2Myb_DNA-binding43.28.8e-1467110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg +T  E++ +v++++  G++ W++Ia+ ++ gRt++++k++w++
  Zosma262g00100.1  67 RGDFTGNEEQTIVKLHAVVGNR-WSLIAAQLP-GRTDNDVKNYWNT 110
                       7899999***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.548965IPR017930Myb domain
SuperFamilySSF466897.42E-2912108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002495.8E-171461IPR001005SANT/Myb domain
CDDcd001672.87E-121761No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2465116IPR009057Homeodomain-like
SMARTSM007174.9E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.1566116IPR017930Myb domain
PfamPF002493.0E-1267110IPR001005SANT/Myb domain
CDDcd001674.07E-974112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRIPCCEKD SVKRGQWTPE EDNKLSSYIA QHGTRNWRVI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKRGDF TGNEEQTIVK LHAVVGNRWS LIAAQLPGRT DNDVKNYWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKCVD FTAAGPSVTS  180
GEAMSGYATM DSDKEETIKK IKLGLSRAMH EPIIDPNNTS PPTKPWILLG SDGEPSDGLM  240
SLCNNYTTGR GMDRFGFGGS SYLNNGEGSS WNQNLCGGGT HIDVVATGST LDGQLVEKRE  300
DDDEEEAQGE KLLRKDSEGL FESECGLWDL TDDLMIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010928123.11e-160transcription factor MYB80
SwissprotQ7XQN11e-115MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A0K9PF410.0A0A0K9PF41_ZOSMR; Myb domain protein 4
STRINGXP_008813758.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-114myb domain protein 103