PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma25g00300.1 | ||||||||
Common Name | ZOSMA_25G00300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | AP2 | ||||||||
Protein Properties | Length: 517aa MW: 56987.2 Da PI: 5.7892 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.7 | 7.7e-15 | 125 | 184 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a+ k++g Zosma25g00300.1 125 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAAIKYWG 184 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 45.4 | 2e-14 | 227 | 278 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f + eeAa+a++ a+ k++g Zosma25g00300.1 227 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSSQEEAAEAYDIAAIKFRG 278 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-16 | 125 | 192 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.55E-20 | 125 | 191 | No hit | No description |
Pfam | PF00847 | 6.7E-12 | 125 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.123 | 126 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-27 | 126 | 198 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-15 | 126 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 127 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-17 | 227 | 288 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-9 | 227 | 278 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.79E-24 | 227 | 288 | No hit | No description |
SMART | SM00380 | 5.7E-33 | 228 | 292 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-17 | 228 | 287 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.834 | 228 | 286 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-6 | 268 | 288 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MDWLAFSLSN QPGFLDSFNQ TVPTTNHVGG AVENGEENRN GGGSSPSDLA LAGPKLENFL 60 GVCGEPPSGD HGVGRGMYHS SRKTSLTSGL LSDYQSDRLE SDCSKAVLPQ TEPNKSVDTF 120 GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV YLGGYDKEEK AARAYDLAAI 180 KYWGPTTNTN FLMPNYEKEI EEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR 240 WQARIGRVAG NKDLYLGTFS SQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKCIANSNL 300 PIGGMSGRTS NSKNVVSPPD QSPCSSSDTK GRTVDLAYGL AMQQQQQQKQ QQEHDYWSFL 360 ALHQQTIQQG SNYRDDNDEN DNNNNSYLNV FPCGGANMDF STGVTTAVDA QGKNGNYMWN 420 CSGGDDDVYI MQHSCDQTQQ DDEEEVEKTN RDSSTGGGGV CYSTIPYATP NALGTGYENE 480 SGSWVTLQPS SSNHAYPQTA TKTNMGVFQT PIFGME* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001290493.1 | 1e-166 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Swissprot | Q6PQQ3 | 1e-126 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0K9PFB1 | 0.0 | A0A0K9PFB1_ZOSMR; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_008803593.1 | 1e-164 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-122 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma25g00300.1 |
Publications ? help Back to Top | |||
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