PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma25g00050.1

Common Name

ZOSMA_25G00050

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

M-type_MADS

Protein Properties

Length: 227aa MW: 24581.1 Da PI: 9.7789

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma25g00050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.3	1.4e-21	18	67	1	49
S---SH.HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienk.snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ +rqv fskRr+g++KKA+ LS+LC+ae+++i+fs+ gk + + Zosma25g00050.1 18 KKIENQeARRQVCFSKRRTGLFKKASDLSILCGAEISIIVFSPAGKAFSF 67 5788863699***********************************97766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.0E-31	10	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.03E-27	10	82	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.997	10	71	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.03E-34	11	79	No hit	No description
PRINTS	PR00404	1.9E-7	12	32	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-23	20	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-7	48	69	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MMIGMKKTSM GRQKIDIKKI ENQEARRQVC FSKRRTGLFK KASDLSILCG AEISIIVFSP 60 AGKAFSFGHP SVESVLNRYI EAATNRGGVT NGNRGSLLDN GHGLSREYTN LAAMLEEERR 120 KKAALEESDG GRGSGWMDLV NINIEQLGLQ ELQQLKKKME DLRNSLLLTE SRAPSASAMS 180 TTQYDNMFMA TAGAVNTIGV GVGIGGNSNL GFFALPNSIN HQGCQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
1tqe_R	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
1tqe_S	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
6byy_A	2e-15	10	93	1	83	MEF2 CHIMERA
6byy_B	2e-15	10	93	1	83	MEF2 CHIMERA
6byy_C	2e-15	10	93	1	83	MEF2 CHIMERA
6byy_D	2e-15	10	93	1	83	MEF2 CHIMERA
6c9l_A	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
6c9l_B	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
6c9l_C	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
6c9l_D	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
6c9l_E	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
6c9l_F	2e-15	10	93	1	83	Myocyte-specific enhancer factor 2B
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008788342.1	7e-51	agamous-like MADS-box protein AGL62
TrEMBL	A0A0K9PHE8	1e-165	A0A0K9PHE8_ZOSMR; MADS-box transcription factor
STRING	XP_008788342.1	3e-50	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1224	36	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-30	AGAMOUS-like 61

Link Out ? help Back to Top
Phytozome	Zosma25g00050.1