PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma222g00320.1
Common NameZOSMA_222G00320
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 240aa    MW: 27149.6 Da    PI: 5.7297
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma222g00320.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY832.9e-2693152359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dgy+WrKYGqK++ +s++prsY+rC++    gC +kk v++s+ed ++  +tY+geH+++
  Zosma222g00320.1  93 DGYCWRKYGQKDILDSKHPRSYFRCSFFfseGCLAKKLVQKSDEDLTIYLVTYSGEHTCS 152
                       9*************************87778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-2686153IPR003657WRKY domain
SuperFamilySSF1182901.57E-2389152IPR003657WRKY domain
SMARTSM007747.0E-3491153IPR003657WRKY domain
PROSITE profilePS5081121.04693149IPR003657WRKY domain
PfamPF031064.1E-2393151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
METSCNPIMI ELLQGYELTR KLQAHLHQSC QVQTSKSLTE SIMVCFQNAM ASVESLRCPK  60
TDKDRRRNTR KRKDVQKCTK QIEVGLNEGP PVDGYCWRKY GQKDILDSKH PRSYFRCSFF  120
FSEGCLAKKL VQKSDEDLTI YLVTYSGEHT CSRIQSVKFD DSSSSSSVIS PSFDPSPSID  180
SFLLENYFSQ SGRSCLNSLS TVPMTSMADV SMPDPSFESE EMDFDSLKSL TNFDPSFFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-17931511068OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PLI31e-176A0A0K9PLI3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.13e-26WRKY DNA-binding protein 46