PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma193g00220.1

Common Name

ZOSMA_193G00220

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 284aa MW: 33935.9 Da PI: 5.6248

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma193g00220.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.8	3.7e-20	37	102	1	66
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt e+++ i++r ++++++ + k++k lWe +s+km+e+gf+r+p qCk+kw+nl +ryk + Zosma193g00220.1 37 QWTYLETKEFIALRWNLDQSFVEMKRNKLLWELISNKMKEKGFQRTPDQCKCKWKNLVTRYKGSES 102 7*************************************************************8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.40E-22	36	101	No hit	No description
Pfam	PF13837	1.4E-16	37	113	No hit	No description
PROSITE profile	PS50090	6.957	38	94	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MESGQHYVVH NPYASAVPSR STVAASSSGD QRERLPQWTY LETKEFIALR WNLDQSFVEM 60 KRNKLLWELI SNKMKEKGFQ RTPDQCKCKW KNLVTRYKGS ESRGQFPFQE DMQRIFSDRM 120 QRFLDSNEGN NGLRQPSLGG LSEEEEEEEE EEEEEYDDAL MVIEGDSKEK KQTKNKRKMA 180 MRSTASNNDR QQQYSIENTL RDFVKWQVQM DTEWMKISEA RELERRDMEM KWRNSMEALA 240 AERADIDRKW RAREEERRCR EEERAERRHE LLVALLNKLT NMH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-12	32	98	1	67	DNA binding protein GT-1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PP97	0.0	A0A0K9PP97_ZOSMR; Trihelix transcription factor GT-3b

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-42	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Zosma193g00220.1