PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma172g00370.1 | ||||||||
Common Name | ZOSMA_172G00370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB_related | ||||||||
Protein Properties | Length: 485aa MW: 55371.1 Da PI: 4.7705 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 435 | 482 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W+ E++ l ++vk++G+g+W+ I + + Rt ++k++w++ Zosma172g00370.1 435 NWSLLEEDALREGVKMYGKGNWRMILDHHSdvfELRTVTDLKDKWRNM 482 7********************************99***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.651 | 428 | 484 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 430 | 484 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.24E-13 | 430 | 483 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0024 | 432 | 484 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-7 | 435 | 482 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.21E-16 | 436 | 484 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MGPNSRIWTL EFLLRQRTHD ADTAFFHLIP SITEDCRDIG DNLECFYYDR LKKTILLRSL 60 ERDAVVTDRT LETLELIEQI DRDTAMESPS SLKEAYCAVA EELTVKHLRT ATCDDLLSSS 120 SFDDAVDNIW ECRIARLECS EASSRLFSES LRVRWKEMEQ AVGNFVLQKR LLMSIRTNKE 180 AFGFVLTYIE DAFQKMGPSV LEFMAEEVIS VNNSDTIGSE EVSVAEDDSA SDKSDNFKDA 240 SEIFLSSQSD HSPNCDIKAE VQSVVEKEII VNTEEGLEKH PTPSEEVLHV RKTLKLCSED 300 LHRVVKDPLL SVMAKADDML KDIEIDSQRA TECENTQNRI PIDVPGTSGC ATDSHEELHG 360 QLNQAEKIKV GIMEWNSTAH TIEWNDSIES LSDNDNSSNN SRRLHLPSHK KTRFSPITQQ 420 PISKRSFCRN RKKINWSLLE EDALREGVKM YGKGNWRMIL DHHSDVFELR TVTDLKDKWR 480 NMTR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PS66 | 0.0 | A0A0K9PS66_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 6e-13 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma172g00370.1 |