PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma149g00100.1 | ||||||||
Common Name | ZOSMA_149G00100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 227aa MW: 24961.5 Da PI: 9.7541 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.5e-13 | 51 | 97 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP a K++Ka+ L+++v+ +++L Zosma149g00100.1 51 KSHSEAERRRRQRINGHLATLRTLLPDA-----IKMDKASLLTEVVRQVREL 97 68*************************9.....7***********9988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.37 | 48 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.23E-13 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.27E-12 | 51 | 99 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 51 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 51 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-10 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 7.5E-8 | 133 | 201 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 4.9E-8 | 134 | 200 | No hit | No description |
PROSITE profile | PS51671 | 8.551 | 135 | 218 | IPR002912 | ACT domain |
CDD | cd04873 | 4.90E-6 | 136 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MIPAGEGDGM EMVMEMMNSS ASAATTNNTD HSMWMSNLIN AGSNVNRRVT KSHSEAERRR 60 RQRINGHLAT LRTLLPDAIK MDKASLLTEV VRQVRELKKY ADDVSALSPD TWNGLVPGEA 120 DEVRMTAAEE TGLVRVSVCC EDRPGLMTEV NQAIRSVQAR VVKAEMATVG GRTKSVVVFQ 180 GQVNGEDRSM LHASLRSILQ KPDSTRNHGF VEKKRLPFSR PLTISQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010254503.1 | 2e-50 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_010254504.1 | 2e-50 | PREDICTED: transcription factor bHLH30-like | ||||
Refseq | XP_010254505.1 | 2e-50 | PREDICTED: transcription factor bHLH30-like | ||||
TrEMBL | A0A0K9PYV8 | 1e-166 | A0A0K9PYV8_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily | ||||
STRING | XP_010254503.1 | 8e-50 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 2e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma149g00100.1 |