PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma122g00440.1
Common NameZOSMA_122G00440
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 319aa    MW: 35461.3 Da    PI: 5.7236
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma122g00440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +++ +v  +G g W+ ++++ g++R++k+c++r+ +yl
  Zosma122g00440.1 14 KGPWTAEEDARILSYVSTHGLGKWTDVPKKAGLKRCGKSCRLRYMNYL 61
                      79********************************************97 PP
2Myb_DNA-binding46.11.1e-1467110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r +++++E+  +v +++  G++ W+tIa++m+ gRt++++k++w++
  Zosma122g00440.1  67 RESFSPQEENMIVFLHATIGSR-WSTIAQYMP-GRTDNDVKNYWNT 110
                       678*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.047965IPR017930Myb domain
SuperFamilySSF466892.36E-2911108IPR009057Homeodomain-like
SMARTSM007174.0E-131363IPR001005SANT/Myb domain
PfamPF002495.0E-151461IPR001005SANT/Myb domain
CDDcd001673.47E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129416.63466116IPR017930Myb domain
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
PfamPF002495.9E-1367110IPR001005SANT/Myb domain
CDDcd001672.23E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRPPCCDKT NVKKGPWTAE EDARILSYVS THGLGKWTDV PKKAGLKRCG KSCRLRYMNY  60
LRPDLKRESF SPQEENMIVF LHATIGSRWS TIAQYMPGRT DNDVKNYWNT KLKKKLVQEG  120
IDPITHKPIS EIMLTLGGVQ PSRTSATNET GKNGRISCLN RDLKNVFMSR SDSVLDPMVA  180
IQNMPETSGY DLLTQLQAIR LVADVSNGAT PMPEMTTVLS ELPQQICTST STCTSTAAPV  240
ADSTRIGNAA DDLNWSDFLV DDIIMCIDDG RHKEVSSTPS TREVIGSSTY MDPMPPSLLL  300
DRHELDFNFD FDLDLDFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804161.11e-93transcription factor MYB35
TrEMBLA0A0K9Q0G60.0A0A0K9Q0G6_ZOSMR; Uncharacterized protein
STRINGXP_008804161.14e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-67MYB family protein