PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma10g00490.1

Common Name

ZOSMA_10G00490

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C3H

Protein Properties

Length: 271aa MW: 30679.3 Da PI: 7.0011

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma10g00490.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.6e-08	111	132	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+r G C +Gd+C FaHg Zosma10g00490.1 111 ICPLFRRDGRCIHGDTCDFAHG 132 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.71E-6	104	136	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.021	106	133	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.192	107	134	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.7E-5	110	134	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-5	111	132	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	52	142	165	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MSNFSSYKCI PLIHSTPKKA FAFLDIVSRD GGDGGGDQDG TKDSDLWNDQ DQMSLFWWNE 60 AYSSDEFRMY EFKVRRCVRT RTHDWTDCPF AHPGEKARRR DPHRYHYSGN ICPLFRRDGR 120 CIHGDTCDFA HGVFECWLHP SRYRTMPCKD GMRCRRKVCF FAHTSHQLRL TSSGTICRNY 180 NKTIFPPKAA STTGGSSSCS PTSTSTGLSY TSPPPSPPVQ LEEIVKSMEA MELRSGCSTV 240 ELLWPNDSGR EASDDEGTVP DLEWVNELVM *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269\|PubMed:18487351}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397189.1	5e-69	PREDICTED: zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9ZWA1	6e-57	C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A0K9Q3D7	0.0	A0A0K9Q3D7_ZOSMR; Zinc finger CCCH domain-containing protein 37
STRING	XP_010417368.1	2e-63	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	7e-60	C3H family protein

Link Out ? help Back to Top
Phytozome	Zosma10g00490.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chang G, et al. AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana. Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238 [PMID:29723526]