PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc02857.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 33403 Da PI: 10.2326 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 121 | 172 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+f+taeeAa+a++ a+++++g+ Zmw_sc02857.1.g00030.1.am.mk 121 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTFDTAEEAARAYDVAAREYRGA 172 68********.**********83...36**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.83E-30 | 121 | 179 | No hit | No description |
Pfam | PF00847 | 3.5E-14 | 121 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 122 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-37 | 122 | 185 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 122 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.474 | 122 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
METAPDAAQF AAPQGGGAEK ARRRILMPPR KRRGAAARTV KALPDCAELY SLLPLHHHRP 60 LALAVAYLFN PLLPRAISAT HTHAPFAHER KNTAMAPRTS EKTTQPASGL ALGVGCGAGG 120 PHYRGVRKRP WGRFAAEIRD PAKKSRVWLG TFDTAEEAAR AYDVAAREYR GAKAKTNFPF 180 TSTTSPTPPV AVAAMGVTGG GGSRSSNSST VESFGGDVQA PMQAMPLPPS LELDLFIRGA 240 GAARFPFSSY PVSQPYFFYG QAAAAHMLKL APTVTVAAVA QSDSDSSSVV DLAPSPPAQR 300 TVTFDLDLNC PPPMEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 118 | 184 | 1 | 68 | ATERF1 |
3gcc_A | 2e-22 | 118 | 184 | 1 | 68 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146973.1 | 3e-75 | uncharacterized LOC100280582 | ||||
Swissprot | Q40477 | 3e-33 | ERF4_TOBAC; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0A9U7H8 | 3e-92 | A0A0A9U7H8_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G174347_P01 | 1e-74 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 |
Publications ? help Back to Top | |||
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