PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02767.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 343aa    MW: 39702.9 Da    PI: 8.8655
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02767.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-057192223
                                    EETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                    +C  Cg +F  + +Lk+H+++H
  Zmw_sc02767.1.g00140.1.sm.mkhc 71 RCLECGACFQKPAHLKQHMQRH 92
                                    7********************9 PP
2zf-C2H221.56e-0798122123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     + Cp  dC+  ++rk++L+rH+ tH
  Zmw_sc02767.1.g00140.1.sm.mkhc  98 FNCPleDCPFIYKRKDHLNRHMLTH 122
                                     78**********************9 PP
3zf-C2H212.30.00051127152123
                                     EEET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                     + C+   C+ +Fs k n++rHi+  H
  Zmw_sc02767.1.g00140.1.sm.mkhc 127 FNCTvdGCDSRFSIKANMQRHIKEfH 152
                                     679999*****************988 PP
4zf-C2H219.72.3e-06164188123
                                     EEET..TTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                     ++C+   C+ksF+ +s Lk+H  +H
  Zmw_sc02767.1.g00140.1.sm.mkhc 164 FVCKeeGCNKSFKYSSKLKKHEESH 188
                                     89*******************9988 PP
5zf-C2H222.52.9e-07218242223
                                     EET..TTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                     kC+   C++sFs+ksnL++H++  H
  Zmw_sc02767.1.g00140.1.sm.mkhc 218 KCSfeGCDRSFSNKSNLTKHMKAcH 242
                                     79999*****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355402446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4897097IPR007087Zinc finger, C2H2
SMARTSM003550.0927092IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-67196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-1082124No hitNo description
Gene3DG3DSA:3.30.160.609.3E-897124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.22498127IPR007087Zinc finger, C2H2
SMARTSM003556.8E-498122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576674.32E-8109159No hitNo description
Gene3DG3DSA:3.30.160.607.3E-9125154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.429127157IPR007087Zinc finger, C2H2
SMARTSM003550.02127152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-8161188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.03E-5162189No hitNo description
PROSITE profilePS5015710.72164188IPR007087Zinc finger, C2H2
SMARTSM003550.0037164188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166188IPR007087Zinc finger, C2H2
SuperFamilySSF576677.95E-9202259No hitNo description
PROSITE profilePS5015712.695217247IPR007087Zinc finger, C2H2
SMARTSM003557.5E-4217242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-8218242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-5243270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.141248274IPR007087Zinc finger, C2H2
SMARTSM003554.2248274IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280250274IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MCSGDEFDGG KSVGKTVYKD IRRYKCDFCD VVRSKKCLIP AHMVEHHKDE LDKSETHNSN  60
GEKIVHQVEQ RCLECGACFQ KPAHLKQHMQ RHSQERLFNC PLEDCPFIYK RKDHLNRHML  120
THQGKLFNCT VDGCDSRFSI KANMQRHIKE FHEDENAVKS NQQFVCKEEG CNKSFKYSSK  180
LKKHEESHVR LNYVEVLKKN IKRHLQAHEE APSSERMKCS FEGCDRSFSN KSNLTKHMKA  240
CHDQLKPFSC RFAGCGKAFT YKHVRDKHEQ SSAHLYVEGD FEEVDAQLHS RSRGGRKRKA  300
LTVETLTRKR VTIPSEPSAT DNAEIRSTYV EANNGPNIRS AGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-24612692189PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-24612692189PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795605.10.0transcription factor IIIA-like isoform X1
SwissprotQ84MZ43e-86TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2T8KTL10.0A0A2T8KTL1_9POAL; Uncharacterized protein
STRINGSi020193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882