PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc02689.1.g00010.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 172aa MW: 18767 Da PI: 7.7045 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 81.3 | 1.6e-25 | 14 | 64 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy+ Il+RR +Rak+e+e++l pylheSRh hAlrR+RgsgGrF Zjn_sc02689.1.g00010.1.sm.mkhc 14 DAPIYVNAKQYEVILRRR-ARAKAEKENRL------PYLHESRHLHALRRARGSGGRF 64 68*************998.59*********......*********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.6E-26 | 12 | 67 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 23.854 | 13 | 67 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.5E-21 | 16 | 64 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
SGGRMLVPLN MPADAPIYVN AKQYEVILRR RARAKAEKEN RLPYLHESRH LHALRRARGS 60 GGRFLNTKKE ANGKDAGAGG KTTLSNPLML QTASPGSEIQ QSELGNLSSV SSFSGSEVSS 120 MYDHEDVDHY HSFDQLRTPF TPLPSLMDGE HGVGNPFKWA AASEGCCDLL EA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-14 | 14 | 70 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577268.1 | 9e-78 | nuclear transcription factor Y subunit A-2 isoform X1 | ||||
Refseq | XP_010237001.1 | 9e-78 | nuclear transcription factor Y subunit A-2 isoform X1 | ||||
Refseq | XP_024310184.1 | 9e-78 | nuclear transcription factor Y subunit A-2 isoform X1 | ||||
Refseq | XP_024310185.1 | 5e-78 | nuclear transcription factor Y subunit A-2 isoform X2 | ||||
TrEMBL | A0A0A9CZS6 | 3e-92 | A0A0A9CZS6_ARUDO; Uncharacterized protein | ||||
STRING | EMT29022 | 7e-78 | (Aegilops tauschii) | ||||
STRING | Pavir.Cb00052.1.p | 2e-78 | (Panicum virgatum) | ||||
STRING | TRIUR3_28596-P1 | 9e-78 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2307 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14020.1 | 3e-20 | nuclear factor Y, subunit A6 |