PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00179.1.g00090.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 405aa    MW: 43630.7 Da    PI: 7.5119
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00179.1.g00090.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.58.4e-17158211957
                                   HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   9 keqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   ++ql +Lee+++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Zjn_sc00179.1.g00090.1.am.mk 158 QQQLMVLEEMYRGgMRTPTASQIQQITAHLadygRIEGKNVFYWFQNHKARDRQ 211
                                   89**********99*************************************996 PP
2Wus_type_Homeobox98.45.7e-32157212964
             Wus_type_Homeobox   9 tpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                   +++Q+++Lee+y+ G+rtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Zjn_sc00179.1.g00090.1.am.mk 157 QQQQLMVLEEMYRGGMRTPTASQIQQITAHLADYGRIEGKNVFYWFQNHKARDRQK 212
                                   579****************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.03E-8158215IPR009057Homeodomain-like
PfamPF000461.8E-14158211IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-5158211IPR009057Homeodomain-like
PROSITE profilePS500719.653159212IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEFTYCVSGY SGTRKHGDAI DNGCGADATN VHRPVASSLT HPHLQRLCRA AGPFLINPAI  60
PGQYGVLPLL QYKLDDVSVD PRQAEIATNQ QNPIHHYRSS PSTRSASPHN STQPTKNHRQ  120
TTSLLTITGS CKLIDHSRVY SREEEDDFMP SQQGGQQQQQ LMVLEEMYRG GMRTPTASQI  180
QQITAHLADY GRIEGKNVFY WFQNHKARDR QKLRRRLCMS HHRHLLTCSA QYNAATATHH  240
HHGHGFPATM PVAPAYGCGG GGVFDQPAGA AGVQLLPPTS PSPAAAAAYG YYYPAATTFA  300
AAPTVRCAGD GGTTPPSPNQ LFNYHQDGGG VALAPAEALG RPEHSLGKLA DNFGVSTTLD  360
DGVEIGPPGF EGSLPSPLTT ALCRPLKTLD LFPGGLKEEQ QHDVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-73BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-73KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.12e-74putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX19e-84A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p1e-75(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-29WOX family protein