PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00132.1.g00850.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 424aa    MW: 46975 Da    PI: 6.1618
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00132.1.g00850.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-1145104255
                             AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                      y+GV++++++gr++A+++d  ++n      k+k+   g ++ +e Aa+a++ a++k++g
  Zjn_sc00132.1.g00850.1.sm.mkhc  45 AYRGVTRHRWTGRFEAHLWDrDTWNRepqakKKKKGKQGAYDDEEAAARAHDLAALKYWG 104
                                     69******************87778889986445555599***9**************98 PP
2AP234.36.1e-11176219955
                             AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Zjn_sc00132.1.g00850.1.sm.mkhc 176 HHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 219
                                     7789******988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-1344113IPR016177DNA-binding domain
PfamPF008473.4E-845104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-1245112IPR001471AP2/ERF domain
SMARTSM003802.0E-1745118IPR001471AP2/ERF domain
PROSITE profilePS5103218.24145112IPR001471AP2/ERF domain
CDDcd000181.89E-19147229No hitNo description
PROSITE profilePS5103215.501148227IPR001471AP2/ERF domain
PfamPF008477.0E-6175218IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-14176229IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-14176227IPR001471AP2/ERF domain
SMARTSM003809.2E-20176233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MARPRTNDEE SSTAGAVRAK PKPKPKRARK GALLPECRPS QRSSAYRGVT RHRWTGRFEA  60
HLWDRDTWNR EPQAKKKKKG KQGAYDDEEA AARAHDLAAL KYWGPGTVLN FPLCSYDDEL  120
KEMEGQSREE YVGSVRRKSS GFSRGVSKYR GVARFSSCKL ALSIGSPAEL TNNLQHHHNG  180
RWEARIGRVL GNKYLYLGTY ATQEEAAVAY DIAAIEHRGL NAVTNFDISH YVNWHRRRGR  240
RGLGEQDGLD ATDLPNDLTE HARATADLDE TEVAVAAAFI EADHLQHQDH IADSYTEQVP  300
DDQEMMLDQL LLLHSPRFEE IMEQVSAAAS ATMTESNASS SPSPSACTSS SAPSSLSQPS  360
PKRQPEPSSA AAARCGFPDD VQTYFERDDD GIGFAFAEVD TFLFGDLGAY AAPMFQCDLD  420
VFVS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-134AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ94AN42e-78AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLK3YHX31e-135K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-70AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]