PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00107.1.g00160.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 656aa MW: 72485.1 Da PI: 7.8548

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00107.1.g00160.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44	7.6e-14	150	229	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 ++Yn ++ e GF +r s+s+++ r++ + ++++vC +g + + + + r+gCk ++++++++d+ w++ Zjn_sc00107.1.g00160.1.sm.mkhc 150 NYYNLHSWEKGFGIRCSSSETN-RQQYVNMKELVCMYQGWPGANIRG---------SMRCGCKSRMVLRRTDDHGWYIR 218 69**************9998.6666*********9998766.........99***************** PP FAR1 80 kleleHnHela 90 ++ +HnH+l+ Zjn_sc00107.1.g00160.1.sm.mkhc 219 LFVDDHNHKLS 229 *******96 PP
2	FAR1	46.7	1.1e-14	460	539	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 ++Yn ++ e GF +r s+s ++ rn+ ++++++vC ++g + + ++ + r+gCk ++++++++d+ w++ Zjn_sc00107.1.g00160.1.sm.mkhc 460 NYYNLHSWEKGFGIRCSSSDSN-RNQYVVMKELVCMCQGWPGANIRR---------SVRCGCKSRMVLRRTDDHGWYIR 528 69*************98887.7777*********9997665.........9****************** PP FAR1 80 kleleHnHela 90 ++ +HnH+l+ Zjn_sc00107.1.g00160.1.sm.mkhc 529 LFVDDHNHKLS 539 *******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-10	150	229	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.9E-11	460	539	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MAAVASGTPT FPNSQHLFSA PTAADAAVIH GGRPSDAAPS DRSAGLLADA GETSARGVLP 60 CQSAEKNTDS TDVAGGTLVD PPADVVKESA PWLITRRRQR GTCGPSERKP IVGRLTALEQ 120 SLLDYKKKPG GCVITPKEGV AFDSYNEAFN YYNLHSWEKG FGIRCSSSET NRQQYVNMKE 180 LVCMYQGWPG ANIRGSMRCG CKSRMVLRRT DDHGWYIRLF VDDHNHKLSG SLGEKSHWSS 240 HKHLDMHTTD IIKQLRSNNV NLSNVYGVMT SRLKPLCGAI AREVATDDIE TNLYGCLMRS 300 EPISSFKWIF CEFVSMMEYL SKVFRGLSQL CVPRTDPSGA TAADAPIIHG AGHPTLRLRV 360 DPVVCWLMWV KQVCVKNTDS IDVAGGMLVD PPVDVVGESA PWIIKRQRQG GTHGPSERKP 420 IVGRLTALEQ AMLDYKKKPG GCVVTPEEGV SFDSYNEAFN YYNLHSWEKG FGIRCSSSDS 480 NRNQYVVMKE LVCMCQGWPG ANIRRSVRCG CKSRMVLRRT DDHGWYIRLF VDDHNHKLSG 540 SLGKKRHWSS HKHLDMHTMD IIKQLKSNNN VNLSKALARV AATDDIETNL CGMPSGSIAK 600 GDSNFKSTQE ISLLPPSSIH LDNLDDPEVG VNPFSANLEG KSPSDDPINL DEEEHY

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MAAVASGTPT FPNSQHLFSA PTAADAAVIH GGRPSDAAPS DRSAGLLADA GETSARGVLP  60
CQSAEKNTDS TDVAGGTLVD PPADVVKESA PWLITRRRQR GTCGPSERKP IVGRLTALEQ  120
SLLDYKKKPG GCVITPKEGV AFDSYNEAFN YYNLHSWEKG FGIRCSSSET NRQQYVNMKE  180
LVCMYQGWPG ANIRGSMRCG CKSRMVLRRT DDHGWYIRLF VDDHNHKLSG SLGEKSHWSS  240
HKHLDMHTTD IIKQLRSNNV NLSNVYGVMT SRLKPLCGAI AREVATDDIE TNLYGCLMRS  300
EPISSFKWIF CEFVSMMEYL SKVFRGLSQL CVPRTDPSGA TAADAPIIHG AGHPTLRLRV  360
DPVVCWLMWV KQVCVKNTDS IDVAGGMLVD PPVDVVGESA PWIIKRQRQG GTHGPSERKP  420
IVGRLTALEQ AMLDYKKKPG GCVVTPEEGV SFDSYNEAFN YYNLHSWEKG FGIRCSSSDS  480
NRNQYVVMKE LVCMCQGWPG ANIRRSVRCG CKSRMVLRRT DDHGWYIRLF VDDHNHKLSG  540
SLGKKRHWSS HKHLDMHTMD IIKQLKSNNN VNLSKALARV AATDDIETNL CGMPSGSIAK  600
GDSNFKSTQE ISLLPPSSIH LDNLDDPEVG VNPFSANLEG KSPSDDPINL DEEEHY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	5e-13	FAR1-related sequence 6