PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00105.1.g00840.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 324aa    MW: 35207.7 Da    PI: 8.9939
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00105.1.g00840.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA972e-30159215158
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                     d+p+YVNaKQy++Il+RR +R+k+e+e++l  k rkpylheSRh hAlrR+RgsgGrF
  Zjn_sc00105.1.g00840.1.sm.mkhc 159 DAPIYVNAKQYEAILRRRRAREKAEKENRL-VKVRKPYLHESRHLHALRRARGSGGRF 215
                                     68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-33157218IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.808158218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-22161183IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.5E-27161215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-22192215IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMGFRQFATA ASSNGAPLPW WTGAAPHQMM YGETWGQGKP PAVSPEDPCR ESRFQVVPGS  60
QALLEPLAPP SPKAVQEREF PDVMRFSIAQ GKGDKGFDHS ATVALQSPYA LYSGHFELGL  120
GHSMVSSKST YADQQYGLLA PYGVGALPGG RIPLNMPSDA PIYVNAKQYE AILRRRRARE  180
KAEKENRLVK VRKPYLHESR HLHALRRARG SGGRFLNTKK DANGKDAGAG GKRTVSNPLM  240
LQAASPSSEI QQSELGNPSS VSSLSGSEVS SMYDHEDVDH YHSFDQLRTP FFTPLPILMD  300
GEHGGGNPFK LAAASENCCD LLKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-17159217261HAPB protein
4g92_A7e-17159217261HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.11e-144nuclear transcription factor Y subunit A-10
RefseqXP_022680516.11e-144nuclear transcription factor Y subunit A-10
TrEMBLA0A0A9CZS61e-159A0A0A9CZS6_ARUDO; Uncharacterized protein
STRINGSi022607m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-24nuclear factor Y, subunit A6