PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00075.1.g00740.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 763aa    MW: 81675.1 Da    PI: 11.3709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00075.1.g00740.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17103151355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr ++ +g+++AeIrdp++   rkr +lg+f+taeeAa+ ++ a+ +l+g
  Zjn_sc00075.1.g00740.1.am.mk 103 FRGVRLRP-WGKYAAEIRDPRQ---RKRLWLGTFDTAEEAAAVYDDAAVRLKG 151
                                   8*******.**********954...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.207102159IPR001471AP2/ERF domain
SMARTSM003804.0E-35102165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-28103160IPR001471AP2/ERF domain
PfamPF008471.4E-9103151IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-20103161IPR016177DNA-binding domain
PRINTSPR003671.3E-8103114IPR001471AP2/ERF domain
CDDcd000181.36E-18103161No hitNo description
PRINTSPR003671.3E-8125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MVDEICRPGG SAVMSSSDSL AAGRSRRVGL PLPHPKRVRV SFVDADATDT DCSGDEGERG  60
NRRVREVIEI NLQAAAQPVP AKRLWRALPA PHVAAGAGLR RPFRGVRLRP WGKYAAEIRD  120
PRQRKRLWLG TFDTAEEAAA VYDDAAVRLK GSQAVTNFPS SVAAAEARVR SPRKEPRPRG  180
RPVRDAASVA RTSPQAPSPA LQQARRDDAV PSCEFEPPTS VLRHADEVAF QAFDFLYGGL  240
GELAAAAPPK AAEFEWMPWW ESEDFVTSGV TPASAVTWEQ QRAQPVRGQP AAWWAPSGAA  300
LCVGCLGQHG AAGRPPAWKP RSSARCHANE VNPLPAQHIA FALQSPRTGP SLGCRHVSSD  360
PGSEVSCFRG AALTVGTAPS VCAGTLPRGR SQGANFRAKM PRRRDGMTEL PSSSGAWEAG  420
TRFRRLRRLS TQPFQHDAVG RVTVAGELHG ASKIQRLRQP CALSSIPSRM PRMKPHLRWP  480
VLSAGATAAR PSSDAKQLAG LLTYEASEII DVSASPALPV GHERTKPLEP SDATYRSSQL  540
AELLFKRRSG PKRRPLPSPP VSDEQSRRPS LLPRRAVPVS VRPRGPARSL SSSIPKPSSV  600
CTHRPRVDSA LSARANPVLH PRRSSSSASS LPPLVDLSVQ HHPLQFKPLR GRVVEGLLVA  660
AVSCSSAPFS IEVFVASLSL ASPAASRRSL RSTHACCGAP VLECAASPSS CFVAGVLAVC  720
FGGLQAVVAL ASTRVSRAAV SHHFGSRVAQ FVDLFITWLS SLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19101166470ATERF1
3gcc_A4e-19101166470ATERF1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241412e-58AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106132e-58AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149612e-58AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-58CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.13e-16cytokinin response factor 3