PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00070.1.g00850.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 27878.5 Da PI: 9.2044 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140 | 1.5e-43 | 11 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknrat 78 lppGfrF+Ptd el+ +yL++++ +++l+++ i++++i+ ++P+dL p +e e yfF++++ ky +g+r+nrat Zjn_sc00070.1.g00850.1.sm.mkhc 11 LPPGFRFRPTDVELILHYLRRRAFESPLPAAVDIPDIRILAHDPSDLlP--PGWSEPERYFFTCKEAKYVKGRRANRAT 87 79***************************9666**************43..3447789********************* PP NAM 79 ksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgk+k+v ++ + lvg+k++Lvfy+g+ p+g+ktdWvmheyrl Zjn_sc00070.1.g00850.1.sm.mkhc 88 GAGYWKATGKEKPVAVAmpaaapsdhQAVLVGMKRSLVFYRGKPPSGSKTDWVMHEYRL 146 ***************998888887655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-48 | 9 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.18 | 11 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-25 | 12 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MATKDSVKSQ LPPGFRFRPT DVELILHYLR RRAFESPLPA AVDIPDIRIL AHDPSDLLPP 60 GWSEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAMPAAAP SDHQAVLVGM 120 KRSLVFYRGK PPSGSKTDWV MHEYRLAGAG LAPCRRAQAG KPPAHPDEGW VLCRVFRKKG 180 SADAAGAAAP ADAEEEEEED GAAAASGFID FFARADTARR RRASSPMVSS SCLTDSSHEP 240 PQQLCRDQET TSRGSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-35 | 11 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-35 | 11 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-35 | 11 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-35 | 11 | 182 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-35 | 11 | 182 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-35 | 11 | 182 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443168.1 | 1e-114 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A3L6RAA2 | 1e-119 | A0A3L6RAA2_PANMI; NAC domain-containing protein 83 | ||||
STRING | Sb08g014060.1 | 1e-113 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 7e-51 | NAC domain containing protein 83 |