PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00069.1.g00920.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 559aa MW: 58996.7 Da PI: 10.4124

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00069.1.g00920.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.4	1.2e-10	123	170	2	53
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 +y+GV+ ++ +++ A I+dp++ ++r++lg+++t+eeAa a++a + + Zjn_sc00069.1.g00920.1.am.mk 123 RYHGVT-SRYGNKFGAMIQDPKT---KRRVWLGTYDTPEEAACAYDASVRTM 170 6999.67799****954...5*****************987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.30E-14	123	181	No hit	No description
SuperFamily	SSF54171	2.29E-12	123	179	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.7E-18	123	180	IPR001471	AP2/ERF domain
SMART	SM00380	7.6E-14	123	185	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	13.933	123	179	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
LTAPARSSSH SSSPRALKSE LPPRARTRVT RPKIPEQKRK ERLVCSALQQ WQAMKQRGGA 60 SETRAGGCLY GMHNISLNNP LALGQQWGLG MEGNIREYAR RAGAKVRADR AAQGREPSSP 120 GRRYHGVTSR YGNKFGAMIQ DPKTKRRVWL GTYDTPEEAA CAYDASVRTM KSNPKFNFPE 180 LIRGEEEKSA AAVLAHFAET KRKRKLAEEA VPPPSAPAPA GDVVGLPGPP TSFPGEEDAL 240 AALKMLQGQG EASSKNKALE AVVSSLSPAP SSSSAPAAPT SHYASTPVST AFKNPFFVPT 300 SAGSASAFRF TTPVLTPALL NFMFPTSHAM ALPPSFHSEP SPAAPSPPAP APAVHSVPVF 360 DPAPLAFHYP HWSAPPPGFH LAPAPAAPAD KSVVSTAPSS SALAPAPDNA SASHFASFFA 420 PTPAPPAAFH LPDTTAPPPG FHPAPAPAAP ATTPLTWQLM YQRHLALSSL QAQQSLRTLR 480 PLLSMSPLGA AIMNTSSVSQ PYGSSSSGAP EISEAELAGY RSLYRMLERE AAGGGLGDVR 540 IDDPGTQDRS RKKKRRGEA

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

LTAPARSSSH SSSPRALKSE LPPRARTRVT RPKIPEQKRK ERLVCSALQQ WQAMKQRGGA  60
SETRAGGCLY GMHNISLNNP LALGQQWGLG MEGNIREYAR RAGAKVRADR AAQGREPSSP  120
GRRYHGVTSR YGNKFGAMIQ DPKTKRRVWL GTYDTPEEAA CAYDASVRTM KSNPKFNFPE  180
LIRGEEEKSA AAVLAHFAET KRKRKLAEEA VPPPSAPAPA GDVVGLPGPP TSFPGEEDAL  240
AALKMLQGQG EASSKNKALE AVVSSLSPAP SSSSAPAAPT SHYASTPVST AFKNPFFVPT  300
SAGSASAFRF TTPVLTPALL NFMFPTSHAM ALPPSFHSEP SPAAPSPPAP APAVHSVPVF  360
DPAPLAFHYP HWSAPPPGFH LAPAPAAPAD KSVVSTAPSS SALAPAPDNA SASHFASFFA  420
PTPAPPAAFH LPDTTAPPPG FHPAPAPAAP ATTPLTWQLM YQRHLALSSL QAQQSLRTLR  480
PLLSMSPLGA AIMNTSSVSQ PYGSSSSGAP EISEAELAGY RSLYRMLERE AAGGGLGDVR  540
IDDPGTQDRS RKKKRRGEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	551	555	KKKRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP35333	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	8e-13	ethylene-responsive element binding factor 13