PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00066.1.g03380.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 327aa    MW: 36515 Da    PI: 4.442
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00066.1.g03380.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573476.9e-15151240398
                        DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 
                                   fqr ws++De+ +L  l   + ++g+ p++ d++a      +  ++++  +ql+ K+++L+  + + vkk   g+    sk
  Zjn_sc00066.1.g03380.1.sm.mk 151 FQRSWSKDDEVRILETLAAHRREHGTLPHHkDLEAALA--GSLDNSDYRGNQLLGKVKSLRSVYSRTVKK---GEL--PSK 224
                                   9************************9776657777543..3344689***********************...544..579 PP

                        DUF573  83 ehdqkifelskkiWgs 98 
                                   +hd+ if+lsk +Wgs
  Zjn_sc00066.1.g03380.1.sm.mk 225 DHDRRIFNLSKEVWGS 240
                                   9*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-19151239IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAPKRPAPPP PPVESSEETD SGSGSEESEE EIALSPPTAT APKNTVRPPP QPEASDESSE  60
EEDESEEEDE DEEEEALKSN YTAPPTANPN PPPPPPTQEE SESDEEGEES ESEEEANDNA  120
PQKESASKLA AEANGEKLPP SSGDNKRGGF FQRSWSKDDE VRILETLAAH RREHGTLPHH  180
KDLEAALAGS LDNSDYRGNQ LLGKVKSLRS VYSRTVKKGE LPSKDHDRRI FNLSKEVWGS  240
DNSPADHTVM RNFEEMCKLY PFFSEEAKAL EKTHPGLLKR EFGVIDDEKA RVLEQKIKKQ  300
RLMQMKVELR RHDLTKELTK ALMDLVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954058.24e-75uncharacterized protein LOC101755591
TrEMBLA0A2S3GTM42e-86A0A2S3GTM4_9POAL; Uncharacterized protein
STRINGPavir.Aa00346.1.p3e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00238.13e-10DNA-binding storekeeper protein-related transcriptional regulator