PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00044.1.g00550.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 282aa MW: 31091.4 Da PI: 4.9192

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00044.1.g00550.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.5e-10	211	251	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+A +Y+k Lq Zjn_sc00044.1.g00550.1.sm.mk 211 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAAHYVKFLQ 251 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.519	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	202	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-11	206	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.01E-12	210	255	No hit	No description
Pfam	PF00010	2.6E-7	211	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MESPYISSTL SMEIDVMEQF LGAHDHYFAY EHVDESIEAM AALFLPSLDT DSNSSSSCLN 60 HDVPPQCWPQ PDHSSSVTFL DPAQSFEFPV MEPFPSADFD SHSGIPYFSE DCSLRGNHFS 120 VSEEEAAKDA PASKKRKSSA VTKASKKIKK VGKKNYVGND NGGNSYAETQ SSSSCTSENG 180 NLEGNANSSS TKTCTRASRG AATDPQSLYA RKRRERINER LRILQTLVPN GTKVDISTML 240 EEAAHYVKFL QLQIKLLSSD DMWMYAPIAY NGVNISDVDL NI

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By jasmonic acid (JA) treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959802.2	1e-145	transcription factor bHLH54
Swissprot	Q84WK0	2e-48	BH085_ARATH; Transcription factor bHLH85
TrEMBL	A0A1E5UZQ7	1e-151	A0A1E5UZQ7_9POAL; Transcription factor bHLH84
STRING	Si032445m	1e-144	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12496	29	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	4e-37	ROOT HAIR DEFECTIVE 6-LIKE 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701] Han H, et al. Altered expression of the TaRSL2 gene contributed to variation in root hair length during allopolyploid wheat evolution. Planta, 2017. 246(5): p. 1019-1028 [PMID:28770336]