PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g02440.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 859aa    MW: 92476.7 Da    PI: 11.5628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g02440.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19685736156
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   ++++GVr ++ +gr++AeIrdp    k+ r++lg+++taeeAa+a++aa+++++g+
  Zjn_sc00040.1.g02440.1.am.mk 685 PHFRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREFRGA 736
                                   689*******.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-13685735IPR001471AP2/ERF domain
CDDcd000189.11E-16685745No hitNo description
SMARTSM003803.5E-36686749IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21686744IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-31686744IPR001471AP2/ERF domain
PROSITE profilePS5103223.986686743IPR001471AP2/ERF domain
PRINTSPR003671.1E-9687698IPR001471AP2/ERF domain
PRINTSPR003671.1E-9709725IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MNAGRERVHV VVHPPFSRIG QEGREGSCGL QPTGSDFGPG IDRHSMLHHD YEHDQAKPPR  60
WEQVNNPNCC SSRLPLPTVN FRCRQIRRDA DANQTEPRSS RGGRCVVKHD VNIRRQVGRG  120
VGDDDLDLVA RRTSGDVSLA PHPAPRAPRR PSPSPRPTGN KQTWWALASQ GQSHRMIRIA  180
PAGSVRISLH STWRRADGAV RVPRCVRYSC ALSGSAAIPS VTAWSRRRPP AGLHLGAMTS  240
PLYYCGSEVR RILAVICPVA RTFSNSPGHR ETVSALPRAC DGRGRVTRPA ATPVPGGGRC  300
GSCVWLSWLS VYGERFEIKR DQRRTVAVGA PADPRSKQTE SLCRSRHFGA PPRADPHFAG  360
GVTACPRPGT RLVPSLRTWL IAQPQEYVLR GSGTGLCRCR QVAHHHAVRA VRPTERKAGN  420
SLPSANGVRV LSARVESRGT RTARFPARQV PFAARMRPAR VNDPLAATGG ERERRAEDGR  480
VGRGQTDSAA VEAAAAPRVF TPAACAADAD TDPRPLTPAR DARIVMRRLP RRGTRDVRAR  540
RAALSSPRSR AAGDRSEKRP PNFNPASLKT SGGGEDRTVK PLADCAQFYS LSRRSTTRSP  600
LFPCFLAFFN PAAGYKMAPP PPSPYPRRQH PPTLAQHIAG TETPAPARHL YTPAAPMAPS  660
TAEKSPVPPA TGLGLGVGGG VGLGPHFRGV RKRPWGRFAA EIRDPAKKSR VWLGTYDTAE  720
EAARAYDAAA REFRGAKAKT NFPHASQCPV PTGGGSPSSN STVESSGGGA QAPPVQGMPL  780
PPTLDLDIFR RAAVRFPFKG FQAAAAAAAA AGYRMFKVVP PSDSDSSSVI DHTPSPPAVT  840
AKKEAAFDLD LNWPPPAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20684743363ATERF1
3gcc_A3e-20684743363ATERF1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006322e-61FP100632.1 Phyllostachys edulis cDNA clone: bphylf032b21, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-18erf domain protein 9