PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g03120.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 325aa    MW: 33639.7 Da    PI: 7.7714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g03120.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-11228273555
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     h+++Er RR+ri +++  L+el P+a      K +Ka++L + ++Y+k Lq
  Zjn_sc00039.1.g03120.1.sm.mkhc 228 HSIAERLRRERIAERMKALQELAPNA-----NKTDKASMLDEIIDYVKFLQ 273
                                     99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.09E-11221276No hitNo description
SuperFamilySSF474594.06E-15221280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.602223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14225280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQHTAREMQP TATGAGQISL DDLCAAVSAG GVHDEFLDQM LGGLPPSAWT DLSGGKAPEG  60
GAQHQQKFGG MYDESALLAS RLREHQISGG GGAETKQMAD LRQGHHVMLQ GMGRSTGGDG  120
GVLLPLTLGS GGSGGNVQAL LKAATNSAGG EAGSVFGGSF TGSLQQQQQQ QRFQPHTQQQ  180
QTAPMSSQGF GGGGGGGGSG ASQQQGGGAP APPRQRVRAR RGQATDPHSI AERLRRERIA  240
ERMKALQELA PNANKTDKAS MLDEIIDYVK FLQLQVLSMS RLGGAAAVAP LVADMSSEVT  300
CSFSLSRLFP LATLLFPHPK ESAGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237RLRRER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620768e-87BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279388e-87KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008667581.11e-109putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLA0A2T7ESD11e-111A0A2T7ESD1_9POAL; Uncharacterized protein
TrEMBLA0A3L6G2F11e-110A0A3L6G2F1_MAIZE; Transcription factor bHLH66
STRINGGRMZM2G350165_P021e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-18LJRHL1-like 1